Rhinichthys klamathensis goyatoka (western speckled dace): 130076114
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Entry
130076114 CDS
T09701
Symbol
tdrd12
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130076114 (tdrd12)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
130076114 (tdrd12)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130076114 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
Helicase_C
CS
DUF6643
Motif
Other DBs
NCBI-GeneID:
130076114
NCBI-ProteinID:
XP_056097026
LinkDB
All DBs
Position
Unknown
AA seq
1296 aa
AA seq
DB search
VCVVFSLALKSWCRAVVESVIEGTLDSQAWCLLVDHGDHIIVRADDVRTPLEKFLQLSFR
VRRFSLAGVRPMTLQVPVSGDPAELVPSSTWDSSATKYLHNLLQVSTLVEAVLCETHAGC
SAVELYLTINDTKICVNHELVAKKFACFVSEKSSVPDGNRNGDRVPVSLAWDIYSCPQEL
LEMKGCCPVKASPAPDIPQNPHRTERRDDPQPQTESEPQKPQVSEEEHTPAPVKPRVHKL
TRNASTDTIGRGWRIRVEATGITTDETCAQTGMNKAQYMKFKLHSKQIPESVEEKRHRPD
QTEENASGSSEEQKEASLSQESNLDDLLASSRLMQFLNPDPLNPDQESLDAKAARCDPGH
LGVLVHSALRVEPCRNLARAPISEQFRKFLLWRKYNGPNVAESYCWPAVARGFDTVLVSP
SGDNPLTYIPPLLMLLQTVSVVSSLAARTGPVAVILCPGWEKVQTVLELLEDSRATHSLH
PTSALLGLDQDEPKKFKIQRNCQLLVTTPFSMMRLLDAQCFLFLRLCHLVLDEADVLYSQ
APEQMSVILKHFQKVVSGEERSSCPRQIIAVGGRWSAGIQALVREHMIYPSVIITVMEEA
ALYGRVHQRVQLCLDCDKISVLLGSLDFHPPKPQKTLIITNSAEETEHVYKAVVNTAVFT
LKAHEDVTDQFDFVIDQWRKDIGQGTQVILVTTNDCLKALGIRDATCVVHYGFPSSPKLF
GRRLFCMSENFRTLPDTDHGESWCPAAQSVLLLSELNARHVCGVLRYLRRAGARLPPELL
QFALGVQQAKEEQKTQRPLCCALKSFGFCRDSTVCPDRHMINKSLDHPKHPDSGTVMVLP
LLIKTASVYSGRIVSRREDRYEALAAAMSAHYAGERRCAVEVLEGELYAVQEENTYSRVR
VMEVPDKGEQLFSSVTACFIDEGRTQEVKSHQLLQLPAQFQELPGQAVEIVLCRAQPVDG
EVDWNPKVTRAVSLKIRGKLHQARVVMSVGNTVWVDPMVRMTRVPGLKTYINEYNVHAEI
LASGFGVNNPQHLDLLKRVFQGEQNLGTLDQHLTDDRSESPALSVSEEMLTSRMKDVVST
HNALRFIHSSSADQEPAEETSPDVNGFSSPDQTSSLVRSLALVVTLGFDYADKDEALSVN
RLQAANKPQLLHNPALLSFQPPSFHPQIKWFQRGEFVTICVKLINPVMQKCEFSSDTVIY
SGYVNDRHYHAKLELSGDIIAERCSWEIRCNEPVMKLMKKEKQDWTTLLKHKSAFVSYEF
DHIDETRSSPVNGHWFQAELGEDGCFVSSESDSDSD
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgtggtgttcagtctggctctgaagagctggtgtcgtgccgtggtcgagtccgtc
atcgaggggacgctggactctcaggcctggtgtttgctggtagaccatggagatcacatc
atcgtcagagcggatgatgtcagaactcctctggagaagttcctgcagctgtccttcagg
gtgcgccgcttcagcctggctggggttcgccccatgacccttcaggtgccggtctctgga
gacccggccgagctcgtgccctcctcaacgtgggacagctctgccaccaaatacttgcac
aatctgttacaagtgtcgactctggtggaagccgttctgtgtgagacgcacgccggttgc
tctgccgttgaactctacttgactatcaatgatacaaagatctgtgtgaaccatgagctc
gtggccaagaagtttgcctgtttcgtgagtgagaagtccagcgtgccggacgggaacagg
aatggagaccgggttcctgtcagcctggcgtgggacatttactcctgtcctcaagagctc
ttagagatgaagggctgctgtccggtcaaagcttcgcccgcgcccgatattccccagaat
ccccaccgaaccgagcggagagatgatccacaaccacagacagaaagcgagccgcagaaa
ccgcaggtgtcggaggaagaacacacgcctgctccggtcaaacctcgagtccataaactg
acccgcaatgccagcaccgacactatcggcagaggatggcggatcagagtcgaggccacg
ggcattaccacagatgaaacctgtgcgcagaccggcatgaacaaggcccaatacatgaag
tttaaattacattcaaagcagattcctgaatctgttgaagagaagcggcaccgtcctgat
cagactgaagagaatgccagtggctcctcagaggagcagaaagaggcatctctctcacaa
gagtccaatcttgatgatctgctggcctcgtcaagactcatgcagtttctgaaccctgat
ccactcaatccagaccaagaatctcttgatgccaaagctgcgcgctgtgacccgggtcac
ctgggtgtgttagtgcactccgccctgcgtgtcgaaccctgcagaaacctggcacgcgct
cccatcagcgagcagttcagaaagttcctgctgtggaggaagtataacgggccgaatgta
gcggagagctactgttggcccgcggtggctcggggctttgacacggtgctggtgtctccc
agcggtgacaatcctctgacctatattcctcctctgctgatgctgttacagacggtgtct
gtcgtctccagcctcgctgctcgcactgggcctgtggcggtgattctgtgtccgggctgg
gagaaagtccagacggtgctggagctcctggaggacagcagagccactcacagtctccat
cccaccagtgctctgctgggcttggaccaggacgagcccaagaagttcaagatccagagg
aactgtcagctgctggtgacgaccccgttctccatgatgagactgctggacgctcagtgc
tttctgttcctgaggctgtgtcacctggtgctggacgaggccgatgtcctgtattcacaa
gctcctgagcagatgtcggtgatcctgaagcacttccagaaggtggtgtccggagaggag
aggtcctcatgccccaggcagatcatcgcagtgggcggtcgctggagcgcgggaatccag
gctctggtgcgagagcacatgatctacccctccgtcattatcaccgtgatggaggaggcc
gcgctgtacggcagggttcatcagagggttcagctgtgtctggactgcgacaagatctcc
gttctactcggatctctggacttccacccgcccaaaccccagaaaaccctcatcattacc
aactcggccgaggagacagagcatgtgtataaggctgtggtcaacactgccgtattcaca
ctgaaagctcatgaagatgtgacggaccaatttgacttcgtcattgatcagtggaggaaa
gacatcggccaaggaactcaggtcattctggtgaccaccaacgactgcctcaaggctctt
ggtatccgggacgccacatgcgtggtccattacgggttccccagctcccccaagctgttc
ggccgacgcctcttctgcatgtcggagaacttcagaacccttccagacacggatcacggg
gagagctggtgtccggcggctcagtctgtgctgctgctgtcggagctgaacgcccggcac
gtgtgcggtgtgcttcggtacctgaggagagccggcgctcgcctgccccccgagctgctg
cagttcgccctcggtgtccagcaggccaaggaggagcagaagacccagcgcccgctctgc
tgcgcgctcaagagcttcggcttctgcagagacagcacagtttgtccagatagacacatg
atcaacaaatccctggatcatccaaagcacccggactctggcactgtaatggttttgccg
ctgctgataaagacggcgagcgtgtactcggggcgtatcgtgagccggagggaggaccgc
tacgaggctctggcggctgccatgagcgcgcactacgccggagagagacgctgcgctgtg
gaggtgctggagggagaactgtacgccgtccaggaggagaacacctacagccgtgtgcgt
gtgatggaggtgccggataaaggagagcagttgttcagcagcgtcacggcctgcttcatc
gacgagggccgtacacaggaagtgaagtcacaccagctgctccagcttcctgctcagttc
caggagctgccgggccaggctgtggagatcgtcctgtgccgagcgcagcccgtcgacggc
gaggtggactggaaccccaaggtgaccagagccgtgagcctgaagatcagagggaagctt
catcaggccagggtcgtgatgagcgtggggaacactgtctgggtcgatccgatggtgcgc
atgacgcgagtgccgggtctgaagacctacatcaacgagtataacgtccacgctgagatc
ctggcctctgggttcggcgtcaataaccctcagcacctggacctgctgaagagggttttc
cagggagagcagaacctcggcacgctggaccagcacctgacagacgacaggagtgagagc
cctgcgctgagcgtttctgaggagatgctgaccagccggatgaaggatgtggtcagtacc
cataatgccctgcgcttcatccacagcagcagcgcagatcaggagccggcagaggagacc
agcccggatgtgaacggattctcatctccagaccagaccagctcactagtccgttcatta
gcacttgtagtgacacttggttttgattatgcagacaaagatgaagccctgagcgtcaac
agattacaggctgctaataaaccgcagttactccataatccagcacttttatcattccag
cctcccagtttccacccgcagatcaagtggtttcagaggggcgagtttgtgaccatctgt
gtgaagctcatcaatccagtgatgcagaagtgtgaattcagctctgacaccgtcatctac
agtgggtacgtgaatgaccggcattaccacgcaaagctggagctgtccggtgacatcatc
gcagagaggtgctcatgggaaatcaggtgcaatgagcccgtgatgaagctgatgaaaaag
gaaaagcaggactggacgacgctcctcaaacacaagagtgccttcgtcagctatgagttt
gaccacatcgatgagactcgttcttctccagtgaacgggcactggttccaggctgagttg
ggagaggacggctgtttcgtcagctccgagagcgacagcgacagcgactga
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