Rhinichthys klamathensis goyatoka (western speckled dace): 130076185
Help
Entry
130076185 CDS
T09701
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
rkg03015
mRNA surveillance pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130076185 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
130076185 (acin1a)
03015 mRNA surveillance pathway
130076185 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130076185 (acin1a)
03041 Spliceosome [BR:
rkg03041
]
130076185 (acin1a)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130076185 (acin1a)
Spliceosome [BR:
rkg03041
]
Complex C
Other components
EJC/TREX
130076185 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
130076185
NCBI-ProteinID:
XP_056097138
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MADLEDVTLDGRPLHSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQKTSTHH
IGLQPNSRIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAAETDGTDHEDHTEANDSIC
TAPNQEVAPSLVDQHKGGTAVGVTASESEELKEKETPGQPSPSAPAQPGAIASLSVRVVG
ERGPTSSHVMADSDDDSEGGDDNDGEEEEWNVKAPRSRRAQPPKSQPVRERSGGSQQQQQ
QPPPQHIPLLSQQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPSRQRISSSSSSGSS
SSDSRSSSPEPAGDSTERRPGPLTLLARKMESEGAFSGAGKRDREGIDGQRSHQEGVVSA
ITHTANAASVLSYPSSVISNQGVSVVRTTVTEESDGTKRDEGSHLLWEQENKKRERQGKQ
GRLKALEKEREEREKVLEQERARVLERERLEREEGLKQERERALQREREEKEKALQQERE
EREKQEKERLERERQEALEQERLEKERLEKERQEREQALERERLEKERQQQALEKERLER
ERLEKERQEREQALERERLERERLEKERQEREQALERERLERERLEKERREQALERERLE
RERLEKERQEREQALERERLERERLEKERQEREQALEREKLERERLEKERQEREKALERE
RLERERLEKERQERERALERERLERERLEKEKQEREQALERERLERERLEKERQKREQAL
ERERLEREQLEKERQEREQALERERLEKERQEREQALERERLERERLEKERQDREQALER
ERLERERLEKKREEREQALERERQEREKALEKERQEKERQEREQALERERLERDAALEKE
RQEIERAKEQERLERERALEREKNEREAALERKRQERERLEKEKALEEEHEREVQRKAEQ
ERALKKQREEQETALKEEKQRALEERERLLEQKRVQEEKEKALKHEKKEEQEKESRLPPW
KRGRDIGGFSSPSEKPDESKAGEPQSAGKDTQSSESDPQQSPTLATPPSPQSSSKKSRFL
RDAPVTVPLPCSPTSVLKRPRTFSDSPMSQAPAIPLASKPEELVQEDAQPPQTSVLVAAP
HELESKTPKVATQQHAPQEEEMETSKNSVASKDTKHEMFRRTEDEKKRGRERVKEVEKKE
RKSSSSSDSSSSDSDSGSSSSSRSSSSSSSSEEEKSRSTSGGRRSKQAQKDSSSQPTEKV
GQTVNEKLPTSQRKKRVFSEQEEKDVCNEDVIQTKKPCLQQKDEKMETRRRKDNIEEDDT
NKDTTRSEVKEAVMAEPEKVPEGSEESTTLKTFSARKISLGSSKPSPGVVSSEGEAETAS
GASAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIKPSLGQEAVLDLHPEEIHLSGED
EGGERGDQELKIRRTVTQVVPSDTQENGQKETKRSEHEDEEERSEGRDRLNQEEKMEGSN
QVSMETEPLSPWPDVDMKTVAPSDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKLS
NIVHVCNLVRPFTLGQLKELLNRTGTLVEEGFWIDKIKSHCYVTYSNAEEAMATRTALHG
VKWPQSNPKFLSVDFCMQEEVDFHRGLGPAGEKPPEEPRGAAAAGPGRPVPLPLLPERDQ
WAEREREMERREKSRAEREWDRDKVRDFSKPGEEAGARRSRSRDRERRRKERGKSKERKT
DKKEKGPEEPPAKLLDDLFRKTKAAPCIYWLPLTEEQAAQRVAARAERMREREKRWKEME
EEDKKREEEHRERMKTSGAAGGDTERDRDRGREREREGDKRKEGYRRPGGNSASGSRRSR
SRSGPLPRDRRR
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttactctggacgggaggccgctccattcgctccgggtagcg
gatttgaaagcggcattggaagagagagggcttccgaaaagcggacagaagaatgctctc
atcaagaggctcaaaggggctcttatgttggagaaccttcagaaaacctccactcatcac
attggcctgcagcctaactcccggattggggaggaaatgagtcagaacagcttcattaaa
cagtacctggccaaacagcaagagcttctcaggcagcgattggagagagaggcacgagag
gcagctgaaactgatggaacagaccatgaagaccacacagaggccaatgacagtatctgt
actgcccctaaccaggaggttgctccctccttagtcgaccaacacaaaggaggtacagca
gttggggtgactgcaagtgagagtgaagagctcaaagaaaaagaaacacccgggcagccg
tccccctccgcacctgcccagcctggcgcaatagcttctttgtcggtgcgggttgttggt
gaaagaggaccgacttcaagccatgtaatggctgatagtgatgatgacagtgaaggtggg
gatgacaatgatggcgaagaggaagagtggaacgtcaaagctccacggagtcgtcgagca
cagcctccaaaaagccaaccggtgagggaaagatctggtggctcgcagcaacagcagcag
cagccacccccccaacatatacctttactttcacagcagctcagacagcccactcctccc
ccatctcctcctcctgaactctctttcccactcccagacacccctaaacagagcccccct
agtcctggagagcccccgtctaggcagcgcatatctagctcttcgagctctggtagttcc
agtagtgacagtcgtagcagtagccctgaaccagcaggggactccacagaacgcagacca
ggcccattgaccttactggcacgcaaaatggagtctgagggagctttctctggggcggga
aagcgtgatagggagggaattgatggacagagaagccaccaagagggagttgtgtccgca
attacccacacagctaatgcagcgtcagttctgtcataccctagttcagtgatctccaac
caaggtgttagtgttgttaggacaacagtgacggaggagagtgatggcacgaagcgggat
gagggtagtcatcttttatgggagcaagaaaacaaaaagagggaaaggcaagggaaacaa
ggaaggctgaaagccctggagaaggagagagaggaaagggagaaggtattggaacaagag
cgagcacgagttttggaacgggaaagactggaacgagaagaaggtctgaaacaggagagg
gagagggctttacagcgagaaagggaagagaaagaaaaggccttacagcaggagagagaa
gaacgagagaagcaagaaaaggagagactagagagagagaggcaggaagctttagagcaa
gagagattggagaaagagaggcttgagaaagaaagacaagaacgagaacaagccttagag
agggagagactcgagaaagagagacaacaacaagctctagagaaggagagattggagaga
gagcggcttgagaaggaaagacaagaacgagaacaagctctagagagggagagattggag
agagagcggcttgagaaggaaagacaagaacgagaacaagctctagagagggagagattg
gagagagagcggcttgagaaggaaagacgagaacaagctctagagagggagagattggag
agagagcggcttgaaaaggaaagacaagaacgagaacaagctctagagagggagagattg
gagagagagcggcttgagaaggaaagacaagaacgagaacaagctctagagagggagaaa
ttggagagagagcggcttgagaaggaaagacaagaacgagaaaaagctctagagagggag
agattggagagagagcggcttgaaaaggaaagacaagaacgagaacgagctctagagagg
gaaagattggagagagagcggcttgagaaggaaaaacaagagcgagaacaagctctagag
agggagagattggagagagagcggcttgagaaggaaagacaaaaacgagaacaagcctta
gagagggaaagattggagagagagcagcttgagaaggaaagacaagaacgagaacaagcc
ttagagagggagagactcgagaaagagagacaagaacgagaacaagctctagagagggag
agattggagagggagcgtcttgagaaggaaagacaagaccgagaacaagctctagagagg
gagagattggagagggagcggcttgagaagaaaagggaagaacgagagcaagctttggaa
cgagaaagacaggaaagagaaaaggctcttgagaaggagaggcaggagaaagaaaggcaa
gaaagagagcaagctttagaaagagagagactggaaagagacgctgctttggagaaagag
agacaagaaattgagagggccaaagaacaagaaaggctggagagagagagggctttggaa
agagaaaaaaacgaaagagaagctgctctggaacgcaagaggcaggagcgagaaagactt
gaaaaggagaaagctttggaggaagagcatgaaagagaagtgcagagaaaagcagagcaa
gagcgagcattgaaaaaacagagagaggagcaggagactgctttaaaagaagagaagcag
agagccttggaggagagggaaagacttttggagcaaaaaagagtgcaggaggagaaagaa
aaggctttgaaacacgaaaaaaaggaggaacaagagaaagaaagtcgtcttcctccatgg
aagcgtggtcgtgatatcggtggtttctcgagtccatcggagaagccagatgaaagtaag
gctggggaaccacaaagcgccggcaaagatactcaatcttcagagtctgacccacaacag
tcacccacacttgcaacaccaccatcccctcaatcttcttccaagaagtcccgcttcctt
agagatgcccctgtgacagttcctctcccatgctcgccaacgtccgtgctgaagagacct
cgtactttctcagacagcccgatgtcacaagcccccgcaattccattagcatctaaacct
gaggaactggtgcaagaagatgcccagccccctcaaacatcagtccttgttgcagcaccc
catgagcttgagagcaagacccccaaggtggccacccaacaacatgcaccacaagaggaa
gagatggagacatcaaagaacagcgtggcaagcaaagacactaaacatgagatgttcaga
agaaccgaggatgagaagaaaagaggaagggaaagggtaaaggaggtggagaaaaaagaa
aggaaatcatcatcatctagcgattcctcttcatccgactcagattctgggtcttcatcc
tcctcgcgctcctccagttcatcatcatcatcagaggaggagaaaagtcgttccacttca
ggtggtaggaggtctaaacaggcccagaaagattcttcatctcagcccacagaaaaagtt
ggtcaaactgtgaatgaaaagcttcctacatcccagcgcaaaaaacgagtcttctcagag
caggaggagaaagatgtttgcaatgaggatgtcatccaaaccaagaaaccctgccttcaa
caaaaagatgagaagatggaaacaagaaggagaaaggacaatattgaggaagatgacact
aacaaagacactaccagaagtgaggtgaaggaggctgtcatggcggagcctgagaaggtt
ccagagggcagtgaggagagcaccacgctaaagaccttctcggcccgaaagatttctctc
ggcagcagcaaaccgtctcctggggtggtgagttcggaaggggaagcggagaccgcaagc
ggtgctagtgctggcaggaagagaagatggggctccagtacagctgtcactgccaagaaa
ccctccatcagtatcaccacagactctttgaagtctttaataccagacatcaagcctagc
ttgggtcaagaggctgtgttagacctgcatccagaggagattcatctctctggggaagac
gaaggaggagagaggggtgaccaagagctgaaaattagacgaactgtaacacaggttgtg
ccctctgacacacaagagaatggacagaaagaaaccaaaagaagtgaacatgaggatgag
gaagaaagaagtgaagggcgggatagacttaaccaggaggaaaaaatggaaggctccaat
caggtttccatggagacagagccgttgtccccttggccagatgtagatatgaagacagtc
gctcccagtgacacactaattcgtcgttcgattagtcagcaaaagtcgggagtgagtatc
accattgatgacccggtccgcacagccaaacaaccctctcctcctcgtggcaagctgtct
aacattgtccatgtctgcaacctggtgaggccgtttaccctggggcagctgaaggagctg
ttgaaccgcacagggactttagtggaggaaggtttctggattgacaagataaaatctcac
tgttacgtcacatactcaaatgcagaagaggcgatggccactcgtacagcattacacggg
gttaaatggccccagagtaacccaaagttcctcagtgttgacttctgcatgcaagaggag
gtggacttccacaggggtttgggtccagcaggagaaaagccaccagaggagccccgtggg
gcggcagcagctggacctggccgtccggtacccctgcctctcctgccggagcgtgaccag
tgggcagaacgagagagggaaatggaaaggagggagaaatcgcgtgcagaaagggaatgg
gacagagataaggtgagggacttcagcaaacccggagaggaagctggcgccagaagatca
cgttcacgagatcgtgagaggaggcgcaaggaaagagggaagagcaaagagaggaaaacc
gataagaaggaaaaaggacccgaagagccacccgctaaactgctggatgatctcttccgc
aaaaccaaagctgctccatgcatatactggctccccctcactgaggagcaggccgcacag
agggtagcggctcgtgccgagcgcatgagggaaagagagaagaggtggaaggagatggaa
gaggaggataagaaacgtgaggaggagcaccgggagaggatgaagaccagcggggcagcc
ggaggggacactgagagagaccgagacagaggtcgagagagggagcgagagggggacaaa
cggaaggagggatatcgcaggcctggcggaaacagtgcaagcgggagcaggaggtcccga
agccgcagcggccctctgcccagagatcgacgacgctag
DBGET
integrated database retrieval system
