Rhinichthys klamathensis goyatoka (western speckled dace): 130076487
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Entry
130076487 CDS
T09701
Symbol
trim25l
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130076487 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130076487 (trim25l)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130076487 (trim25l)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130076487 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
zf-RING_5
ANCHR-like_BBOX
RasGAP_C
U-box
GlutR_dimer
zf-RING_6
Mis12
zf-RING_10
DUF948
Motif
Other DBs
NCBI-GeneID:
130076487
NCBI-ProteinID:
XP_056097556
LinkDB
All DBs
Position
Unknown
AA seq
852 aa
AA seq
DB search
MSGRVWTEEQFNCPVCLDLPTDPVTIPCGHSYCKACIADYWDNEGRKSGTYSCPECRQGF
NPRPTLCRNTMLAEAVEQLRRGNLNPSGRESIKSARRAATSASERARTRSKGAPKPLPAS
AVPCDRCPEPTAAVKTCLVCMASFCEAHLKPHDLQDKLKSHELIAPTGNLSQKICPEHKY
LQEFFCRSCQMYVCWLCTSNQHKGHESLSTQAERSEKQKELGAVLSENHQRLQDRERELK
DMKKVLDTLTRSSDTVRDEADAVLSELQESVQRMLDLLQDVMLSAGQEKLNEAQDVVTKL
EAEVKQLKNKDGELKELINCQDNIHFLKTYQSLCCPLEGGELGAVTANPEATFDPVRSVI
VQLREKVEEMCDQELDKINKTVFNTTSFTVAERNGQKTGGLMKLFSGKGTRAARAQGPPP
LPSVSTRGSVNTRPQAVRNSEPRVNRGVTNSQRPAREERDDTDRSRSSLRPRETQRREER
ENPEETWSLSSGRGRRRGENKEQERENQRRQSTQSRSTRDEEQADRRSLSSIRPRLRRED
KEQVNGESPTPSQQSSNAADRQQPARQSDRWSLSSLLPRSRKKRQDTVKEATPTIQEAES
VMPRSPASASVWGAPAEVNPSLFLDSPTDNPFINPAFPSLREINIDSIQAPEPRTRDEFL
QYACDLTLDPNTAHRRLVLSEGDTVATLHQTSQAFPDLSQRFDCWTQVLCVQKLSSERCY
WEVEWRGRGSSLGVASASMPRKGADSGAGLGYNSQSWSLELSDMCCAAMHANQKEEIPVT
YSPRVGVFLDRPAGTLSFYSVDDELVPLHVFHGSFPAPLYAAFGVGCGVGVGLDFAMGQF
SSTSDSIKICPL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgtgtatggacagaggagcagtttaactgccccgtgtgtctggatctgccc
actgaccccgtgaccatcccgtgcggccacagttactgcaaggcttgtatcgcagattac
tgggataatgaaggcaggaaaagcggaacctacagctgtcctgaatgccggcagggcttc
aaccctcgtcccactctctgccggaacacaatgctggctgaagccgtggagcagctccgg
cgcgggaacctgaacccctccgggcgcgagtccatcaagagcgcgcggcgcgcggcaacc
tccgcgtcagagcgcgcgcgcacacggagcaaaggagccccgaaacccctgcccgcctcc
gccgtgccctgtgaccggtgtccggagcccacagcggccgtgaagacgtgtttggtgtgt
atggcatcgttctgcgaggctcacctgaaaccccacgacctgcaggacaagctgaagagc
cacgagctgatcgcgcccaccgggaacctgagtcagaagatctgccccgagcacaagtac
ctgcaggagttcttctgccgctcgtgccagatgtacgtgtgctggctctgcaccagtaac
cagcacaagggccacgagagcctgtccacgcaggcggagcgctccgagaaacagaaagag
ctgggcgcagttctgtctgagaaccaccagagactccaggacagagagagagaactgaaa
gacatgaaaaaagtcttagacacgctcacgcgttcctcagacacggtgcgggacgaggct
gatgcggtcctgtcggagctccaggagtcagtgcagcggatgctggatcttctccaggac
gtgatgctctccgccgggcaggagaagctcaacgaggcccaggacgtggtgaccaaactg
gaggccgaagtcaaacagctgaagaataaagatggagaactcaaagagctcatcaactgc
caggacaatatccacttcctgaagacgtatcagtctctgtgctgtccgctggaaggggga
gagctgggagctgtgaccgctaaccctgaagccacgtttgatcccgtcaggagcgtcatt
gtccagctcagggagaaagtggaggagatgtgtgaccaggagctggacaagatcaacaag
acagtgttcaacaccacctcgttcacggtggcagagcgcaacggccagaaaacaggaggc
ttgatgaagctgttttccggaaaaggaaccagagctgctcgtgcgcaaggacccccacca
ctgccgtcagtaagcacacgaggatctgtgaacacgcgtccacaagccgtgagaaacagt
gagccaagagtcaacagaggtgttacaaactcccaaagaccagcgagagaggagagagat
gacaccgacaggagtcgcagttcactgagacccagagagacacaaagaagagaggaaaga
gaaaaccctgaagaaacctggagtttaagttcaggaagagggagacgtagaggagaaaat
aaagagcaggaaagagaaaatcaaagacgccagagcacacagagcagaagcacacgtgat
gaagagcaagcggaccgccggagcttgagttcaatcagaccgagactgaggagagaggac
aaagagcaagtcaatggagaaagcccgactccctcacagcaaagctcaaacgctgcggac
cgacagcagccggccagacaatcggaccgatggagtctgagctctctcttacccagaagc
aggaagaagagacaggacacagtgaaagaggccacacccactatacaggaggcggagtca
gtgatgccgcgtagccccgcctctgccagtgtctggggagcgccagcagaagtgaatccc
tctcttttcctggactcaccaactgacaatcccttcatcaatcctgcttttccctcattg
agagaaattaacattgacagcattcaagccccagagccgaggaccagagacgagttcctg
caatatgcttgtgatttgaccctggacccaaacacagcccaccggcgcctggtcctgtct
gaaggagacaccgtagccactcttcatcagacgtcccaggcgttccctgacctctctcag
cgcttcgactgctggacgcaggtgttgtgtgtccagaagctgtcctctgagcgctgctac
tgggaggtggagtggagggggcgcggctcgtctctgggtgtggccagtgcctcaatgccc
cgcaaaggggcggattcaggggcggggcttgggtataacagccaatcgtggagcttggag
ctgtcagacatgtgctgcgctgccatgcacgccaatcagaaggaggagatccccgtgacc
tacagtccccgtgtaggggtgtttctggaccggcccgcagggactctgagtttctatagc
gtggatgacgagctggttcctctccatgtctttcacgggtcgttcccggccccgctgtat
gctgcgttcggggtgggctgtggggtcggcgtggggctcgacttcgccatgggtcagttc
agctccacgtcagacagcattaaaatctgtcccttgtga
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integrated database retrieval system
