Rhinichthys klamathensis goyatoka (western speckled dace): 130077182
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Entry
130077182 CDS
T09701
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130077182
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130077182
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130077182
NCBI-ProteinID:
XP_056098301
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVP
GLPGDPGNPGEIGQMGPEGPPGQKGSNGPPGFPGIDGIKGDRGEQGEKGDMGEQGPKGDT
GEKGNAGSSAAGIKGEPGEPGRGGQKGEPGLPGLPGLPGIKGEPGFFGPQGEPGLPGLPG
TKGERGEPGPSGKGERGETGPVGHKGEQGEPGASGLKGSKGDAGDKGGEGPTGSQGLPGE
KGEQGTTEIIDYNGNIQEALQKITTITVTGPPGPPGPVGPKGMKGDQGVTGLPGLDGERG
HKGSKGDMGIPGISGEKGSMGLPGLQGVNGLKGDKGDAGLPGPQGPSIIGPPGAPGPHGP
PGPMGPHGFPGPKGEPGLLGLKGLRGETGYKGDRGPLGLPGASGLDGKLGPRGMDGPIGA
PGPAGPKGDGGEKGDVGDPGARGPYGLPGAAGTPGVDGLPGLKGDKGDVGERGEKGEKGK
KGKKGPKGEKGEQGAPGLDAPCPLGFRGFKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGC
WQKGVTPWLVA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggtcttccctaagataaatcatggctttctttctgctgatcaacaactcattaaacgt
cgactcattaagggtgaccagggtcaagcagggcccccaggacctcctgggcctccaggt
cccccaggccccagaggacccccaggggacacaggcaaagatggtcctcggggagttcca
gggctcccgggagaccctggaaatccaggggagatcggtcaaatgggacctgagggccct
cctggacagaagggttccaatgggccacctggttttccaggtatcgatggaataaagggt
gacagaggtgaacagggtgagaagggagacatgggagagcaggggccaaaaggtgacact
ggagagaagggtaatgccggatcctctgctgctggaattaagggtgagccaggagagcca
ggacgtggaggacaaaagggtgagccaggacttccagggctgcctggactccccgggatt
aagggtgaacctggtttctttgggcctcaaggtgagcctgggcttccaggtcttccagga
actaagggagagagaggagaacctggaccttctggcaagggtgaacgtggtgagacaggt
cccgtaggacacaagggagaacagggggaaccaggagcatcaggcctgaaaggttcaaag
ggggatgcaggagacaaaggtggtgaaggcccaacaggatcacaagggctacctggggag
aaaggtgaacagggtacaactgaaatcatagactacaatggaaacattcaagaggctctt
cagaagataactactattacagttacgggtccccctggacctcctgggccagttggacca
aagggaatgaagggtgatcagggtgttactggacttcctggactagatggagaaaggggt
cacaaaggttctaaaggtgatatgggtatccctggaatatccggagaaaagggatcaatg
ggtcttcctggcttacagggtgtgaatggtctgaaaggagacaaaggagatgctggcctg
cctggacctcagggaccctcaattattggtccccctggagcacctggtccacatggacca
cctggacccatgggtcctcatggattccctggcccaaagggggaaccaggtttgcttggt
ctcaagggactgcgaggggagactgggtataagggtgacagaggacccctgggtctccct
ggagcatctggcttggatggcaagctgggacccaggggtatggatggaccaatcggggct
cctggtccagcaggtccgaagggagatggaggtgagaagggtgatgttggtgatcctgga
gccagagggccatatgggttacctggagctgctggaacacctggagtggatgggttacca
ggcttaaagggagacaagggcgatgtgggggaaagaggagaaaagggggagaagggaaag
aagggcaaaaaggggcctaagggggagaaaggagaacagggtgcccctggattagatgca
ccctgcccactgggtttccggggctttaagggtgaaaagggcgagccaggtcagcctggc
ctggatgggctggatgccccgtgccaattgggtccagatggacttccaatgccaggctgt
tggcagaagggtgtcactccttggctggtggcttga
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