Rhinichthys klamathensis goyatoka (western speckled dace): 130077208
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Entry
130077208 CDS
T09701
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130077208 (lingo1b)
Membrane trafficking [BR:
rkg04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
130077208 (lingo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRRNT
LRR_9
V-set
LRR_RPS2
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
130077208
NCBI-ProteinID:
XP_056098339
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MTFLQVTIKMVAREASGHSYLVACWQPILILMLGTVLSGSATGCPSRCECSAQERSVVCH
RRKLISLPEGIPIDTRLLDLSKNRLKAINPEEFLNYPHLEELQLNENIISVIEPGAFINL
LGLRTLGLRNNKLKLIQQGVFTGLSNLTRLDISENKIVILLDNVFQDLYNLKELEVGDND
LVFISHRAFHGLSSLEQLTMERCNLTSVPTEAFSHLHNLMILRLRHLNINVIRDFSFRRL
YRLKVLEIANWPLLETLTTKSLHGLNITTLSITNCNLTAVPYVAIQHLVYLRFFNLSFNP
IEVVEGNKMHNLLRLQAFHLVGGRLVSIEPYSFRGLNYLRVLNVSSNSLSTLEESAFHSV
GNLETLALHDNPLACDCRLLWVFRRRWRLNFNRQQPSCEMPEFLQGKEFKDFPDVLPTNY
FTCQKSKIRDQKAIHRFVDEGTTVQFPCQADGDPAPMIMWQSPKKQFITTKSIGRLSVSP
DGTLEVRYAQIQDNGTYTCIAVNAGGNDTRLAHLHVHSYSPNWPHQPNKTFAFISNQPND
NSANGTGAMDPFPFDMKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYV
PRKIDGESSPAEGSHKISMKMI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttctgcaggttaccatcaaaatggtggccagagaggcaagtgggcacagctac
cttgtggcgtgctggcagcctattcttatcctgatgctgggtaccgtgctgtccggctct
gccactggctgcccctctcgctgtgagtgcagtgcccaagagcgctcggttgtgtgtcat
cggcggaagctgatctccctccccgagggaattcccattgacacacgactattagatctc
agcaagaaccgcttgaaagccatcaaccctgaggaatttctcaattacccacacctggag
gagctacagcttaatgagaacatcatttccgtcattgaaccaggggccttcatcaacctc
cttggcttgcgaactctgggactacgcaacaacaagctgaagttgattcaacagggtgtt
ttcactggcctcagtaacctcactcggttagatattagtgagaataaaattgttattttg
ttggacaacgtgtttcaagacctctacaacctgaaagagctggaggtgggggacaacgac
ctggtgttcatctctcacagagcttttcatggccttagcagcctagagcagctcactatg
gaaagatgcaacctgacctctgtgccaacagaggccttcagtcatcttcacaacctgatg
atcctcaggctgcggcatctgaacatcaacgtcattcgagacttttctttcaggaggctt
tatcgactcaaagtcttagagatagcaaactggcctcttttagaaaccttgaccacaaag
tccctccatggactcaacatcacaaccttgagcatcacaaattgcaatctcactgccgtc
ccttatgtggccattcagcacctggtttaccttcgatttttcaacctgtccttcaatccg
attgaggttgtggagggcaacaaaatgcacaatttgctgaggctccaggcttttcacttg
gttgggggccgtctagtcagcatcgagccttattcattcagaggactcaactaccttcgg
gttctcaatgtatccagcaatagtttaagcactttagaggagtctgcctttcactctgtc
ggcaatctggagacactggctcttcatgacaaccctttggcatgtgactgtcgtctcctc
tgggtctttcgccgtagatggagacttaatttcaaccgccagcagccatcttgtgaaatg
ccagaatttttgcagggtaaagagtttaaagacttcccagatgttctcccaacaaattat
tttacttgtcagaaatctaagatccgagatcaaaaagccattcatagatttgtggatgag
gggaccactgtccaattcccttgccaagcagatggagaccccgctcccatgattatgtgg
cagtctccaaaaaagcaatttatcactactaaaagcatcggccggctgtcggtgtctcct
gatggcaccctagaggttagatatgcccaaatacaagacaatggcacatacacatgcatt
gctgtcaatgcagggggtaacgacacccgtttggctcacctacacgttcatagctactct
cccaattggccccatcagcccaataagacctttgccttcatctcgaaccagcccaatgat
aacagtgccaatggaactggtgcgatggatccctttcccttcgatatgaagactctcatt
atcgctaccaccatggggtttatctctttcttgggagtggtgctgttctgtctggtgctc
ttgttcctctggagtcgagggaaaggcaatgccaagccaaacattgaaattgagtatgtg
ccacggaaaatagatggagaaagcagccctgctgagggatctcacaagatcagtatgaag
atgatttaa
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