Rhinichthys klamathensis goyatoka (western speckled dace): 130078400
Help
Entry
130078400 CDS
T09701
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130078400 (pcdh18a)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130078400 (pcdh18a)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
MPS-4
SIT
Cadherin_C_2
Syndecan
Motif
Other DBs
NCBI-GeneID:
130078400
NCBI-ProteinID:
XP_056099864
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MDTSKGTVFCVTLLKLAVLVTLAQHVSAKTLKYQVYEEQKVGTVIARLREDVADVLSKLP
SSIPLRFRAMQRGSASLLSVRDQDGEISIRTKIDREKLCEKNLNCTIEFDVLTLPTEHLQ
LFHIEVEILDINDNAPQFARPVIPIEISETAVVGTRIPLDSATDPDVGENSLNTYSLTPS
DFFKIDILTRTDGAKYAELIVLKELDREVRASYELQLTASDRGVPPKFGTTLLKISIADS
NDNNPVFEKPSYVINLLENSLLGSLLIDLNATDPDEGTNGKIVYSFSSHVSPKILETFKI
SSDNGHLTLMRKVDFESTNSFDIDVQAQDMGPNSMPAHCKVIIKVVDVNDNKPDISINLM
SSGNEEIAYISETAPVDSFVALVRVDDLDSGLNGEVECRLHGQGHFRLQKTYEKNYMIVT
NVTLDREKRSEFSLTVIGEDKGSPSLSTIKRFTVQVQDENDNAPRFEKSRYEISKAENNS
PGAYLSSVKASDPDLGPNGQVSYSILESMIHGSSISTYVTIDPSNGDIYALRTFDREDVS
QISFLVQARDSGSPPLRSNVTFVLTVLDENDNRPVIMMPQLWNHTADVPVSKYAEVGDIV
TVVRAIDRDAGTNGDLSCSVVGGNEAGYFAMDAKTCEIRTNVSMQDIPQDHVELTILVQD
HGAQPLSARALLRLSLYENIENHMNPHLTGGGSGDGPLDVSMIIIISLVAICAVLLLIMV
AFALRCSREKKDTRSYNCRVAESTYQQHPKKPSRQIHKGDITLMPTVNGTLPIRAHHRSP
TSSPGPERAHMGTRQSQHSRHSLNSLVTISSNHIPENFALELTHATPPVEQVSQLLSILH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSDAGDSDCEMGRDSPIDRLLGD
GFGDLFHSDGHHRLHPAVMRLCTEECRVLGHSDQCWMPCQASSDYRVNMYIPGEESRPQV
LEEDQQSVDSAKKSFSTFGKDNDEECGSSLLSEMNNVFQRLLPPSYAEVRELEECAGPPP
YSIGMEIRKGFLPGKASSTGPSYPQGVAVWAANTHFQNPGGAVTSGHGSTNHAASQAHLK
WLPAMEEIPENYEEDDLESVLSQRQGKRNDTRHEVVDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggataccagcaagggcacagtgttctgtgtcactttactcaaacttgctgtgctcgta
acattggcacaacacgtctcggctaaaactctgaaataccaagtttacgaagagcagaag
gtgggtacagtaatcgccagacttcgagaagatgtcgctgatgttttgtccaaacttccg
agctcgattccgttacgctttagagccatgcagcgcggcagcgcgtctcttctctccgtg
cgcgaccaggatggagagattagcatcaggaccaaaatagaccgcgagaaactgtgcgaa
aagaatcttaactgcactatcgaatttgacgtcctcaccctccccacggagcacctgcag
ctgttccacatcgaagtggagattttggacattaacgataatgcgccacagttcgcgcgc
cccgtcattcccatagagatctccgaaaccgccgtcgtggggacgcgcattccccttgac
agcgccacagatccagacgtcggggagaactctctgaacacatactctctgaccccatct
gacttctttaagattgatattctaactagaaccgatggcgccaagtacgctgagctcatt
gtgcttaaagagctggatagagaggtgcgagcgagttatgaactccagctcaccgcctca
gacaggggcgttcccccaaaatttggaacaacgctcctgaaaatcagcatagctgactcg
aacgacaacaatccggtatttgagaaaccatcttatgtgatcaatttgcttgaaaattcc
cttttgggcagtttgcttattgatctgaatgccactgacccagatgaagggaccaatggg
aaaatcgtatattcttttagcagtcacgtgtcacctaaaattttagagacctttaaaatt
agttctgataacggtcatttgacactgatgaggaaagttgactttgaaagcacaaattcg
tttgacatagatgttcaagctcaagacatgggccccaactcaatgccagcacactgtaaa
gtcataatcaaagtggtggacgtgaatgacaacaaacctgacattagtattaatttaatg
tcctctggaaacgaggagatagcttatatatcagagacagctcctgtagattcatttgtt
gctctggtgagggtagatgacctggactctgggttgaatggagaggtggagtgccgtctc
cacggccagggtcatttcaggctgcagaagacatatgagaagaactacatgattgtaaca
aatgtcactctggacagagagaagaggtcagagttcagcttgaccgttattggcgaagat
aaaggctctccaagtttatctaccataaaacgcttcactgtgcaggtccaggatgagaac
gacaatgcgccgaggtttgagaagagcaggtatgagatttccaaggcagaaaacaactca
ccaggagcttatctgtcatctgtgaaggcctcagatccagacctgggcccaaatggacaa
gtgagctactccatacttgaaagtatgatccatgggagctccatctccacttacgtcacc
attgacccctctaacggagacatttatgctctgcgtacttttgatcgtgaagacgtaagt
cagatctcgttcttagtccaggcccgggattctggaagtcctccgctgcgtagtaacgtg
acttttgtgttgaccgtcttggatgagaatgacaacagaccggtcatcatgatgcctcag
ctgtggaaccacacggctgatgttcccgtatccaaatacgcagaggtcggggacattgta
actgtcgtccgtgccatagaccgtgatgctggcaccaacggtgacctttcatgttctgtc
gtaggaggcaacgaggcaggttacttcgccatggatgctaaaacatgcgaaattcggacc
aatgtcagcatgcaggacattccacaggatcacgtggagctgaccatcctagtgcaggac
catggtgcccaaccccttagtgccagagccctactgaggctttcactttatgaaaacatt
gagaaccacatgaacccccatctaacaggtggaggatctggagatggccctctagacgtg
tcaatgatcatcatcatctcccttgtggcgatatgtgctgttctacttctcatcatggtg
gcctttgccctacgctgctcacgtgaaaagaaggacactcgctcatacaactgcagggtg
gctgagtctacttaccaacagcaccctaaaaaaccctcacggcagatccataagggtgac
atcaccctgatgccaactgtcaacgggaccctcccgatccgggcgcaccatcgctcgcca
acctcctcgcccggaccagaacgggcccacatgggcacccggcagagccaacacagccgc
cattcgctaaacagcttggtcactatttcctccaatcacatccctgagaacttcgccctg
gagcttacacatgccacgccccctgtggagcaagtctcacagctcctctcaatactccat
cagggtcagtatcagccacggcccagcttcagagggaacaaatactctcgcagctacagg
tacgccctccaggacatggataagttcagtctgaaagatagtgggcgtggcgacagtgat
gcgggcgacagcgactgcgagatgggccgcgattcgcccatcgaccggttgctaggcgac
ggcttcggagacctcttccacagcgatggacaccatcgtctccacccagcagtcatgaga
ttgtgtacggaggagtgccgtgtgttgggtcactctgaccagtgctggatgccatgtcag
gcgtcctcggattaccgtgtgaacatgtacatccccggagaagagagcaggcctcaggtc
ctcgaagaggaccagcagtcagtcgactcagctaagaagagcttttctaccttcggaaag
gacaacgatgaggaatgcggaagctctctgctgtcagaaatgaacaacgtcttccaacgt
ctcctgccaccttcttacgctgaggtcagagagctcgaagaatgcgccggcccgccccct
tactccattggcatggagatcagaaagggcttcctgccgggtaaagcgtcatctaccggt
ccctcttacccacagggtgttgctgtgtgggcggccaatactcactttcagaatcccggt
ggtgccgtgactagcggacatggctcaaccaatcatgcggcctcgcaggcacacttaaaa
tggctgccggcgatggaggagattccagagaactacgaagaggacgacttggagagcgtg
ctcagccagcggcagggaaaacgcaacgacacgagacacgaagtggtcgacgctagtgaa
ctggttgccgaaatcaacaaattgcttcaggacgtacgccagagctaa
DBGET
integrated database retrieval system
