Rhinichthys klamathensis goyatoka (western speckled dace): 130078449
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Entry
130078449 CDS
T09701
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130078449 (ythdc2)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130078449 (ythdc2)
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130078449 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
ATPase
nSTAND3
PhoH
ABC_tran
AAA_22
Ank_4
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
130078449
NCBI-ProteinID:
XP_056099939
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MSRKSSMSASKQTTSLKAKGLKDIRIDEEVKISVNIALERFQYSDDKELDFPSSLTNSER
AFVHRLAQSLGYVSKSRGKGSSRCLTVRKKDGTESARSVMTCGLTHNSKHMVQSLLQRFP
ITNKERSELQPRTERAVLASPDTGDKSRTSGRLSHGIPQVPHMRGPSELDCFRRSLPVYE
RQDELVQTIRENQVVLVLGETGSGKTTQIPQFLLDDCSGNGIPCRIFCTQPRRLATIAVA
ERVAAERGEKIGQTVGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDDAMSMVTHVIVDE
VHERDGLTDFLLTKMKDMLQKMPSLKLILSSAALDVSLFIRYFGACPVIHIEGCPYEVKQ
LFLEDILRTTGYTNKDMIKYKKEAQKEERQQSSLTEWCESHQADPDPEPARERTPSCVLQ
ENDLLDDGGDSVFSQMSEKDVATLEPWLLREMDACISNIFLNQDADAFIQLFNLILNENI
SVDYRHSETSATALMVSSGRGFLCQMEQLLSMGANVNIRASNGWTALDWAKRFKQPEAVD
LLESHIWGVEAGRLDEASLVQSSTSDLSSEDQERLKAYHHSFDDEKVDLDLVLHLLFNIC
QSSDEGAVLIFLPGYDEIVSLRDRIVFDDKRFTDHQQRFQVFILHSSMQTSDQKKVLRNT
PKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDAMNNVTMLKMVWISKASALQRK
GRAGRCRPGICFHLFSRLRFNNMLEHQIPQLLRMPLQELCLHTKLLAPVSCPIAEFLSRA
PEPPHLHTVKHAVQMLKTIDAMDPWENLTELGFHLADLPVEPHLGKMVLCAVVLKCLDPI
LTIACTLAHRDPFVLPAQAAQKRGAMLCRKRFTANTFSDHMALLRAFQAWQKARSDGWER
AFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKAALVS
GMYPNLIHVERDSLSLTGSREKRVRFHPTSVLSQPQYKKIPPANGQAAAVESLPCDWLIY
DEMTRAHRIASVRCCSVVTPLTVAIFGGCAKLPSSALQEHRGAGDGVNDSSDSEMEDRAT
ARLAHISIDEWLNFKLDREMAELVFGLRQRWQSLFLRRIRSPSKACSQLDEATIRTLVSV
LSAEEQVSGLQQPTGIGQRPRPMNSDEAPQTTCRSTEEPPSPDRPRLASQMKNHRSLYSK
PLGEELVLFHSADDSSSPSSGKSCTSPPPRPLRSCVRYFIMKSSNTRNIELSQQRGIWST
TPSNEHKLTRAFQESSAVFLVFSVQGSGHFQGYARMTSSISGERCLDWGSVGLGGVFGVE
WVRKENLPFQLTQHLLNPWNDSKRVQISRDGQELEPQAGSQLLQFWERI
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtaaatcgagcatgagcgcgtctaagcagacgacatctctgaaagctaaagga
ctcaaagacatcaggatcgatgaagaggtcaagatctccgtgaacatcgcgctggagagg
ttccagtacagcgacgacaaagagctggatttcccttcttcattgacaaattctgagaga
gcgttcgttcatcggcttgctcagtcgctaggctacgtctcgaaaagcagagggaaaggc
tcgagtcgatgtctgactgtgaggaagaaggacggcacggagtcggctcgctccgtcatg
acctgtggcctcacacacaactccaaacacatggtgcagagcctcctgcagaggttcccc
atcaccaacaaggagcgcagcgagctccagccgcgcaccgagagggccgtgctcgcgtct
cccgacactggcgataaaagcaggacgagcgggcgtctcagccacgggatccctcaggtc
cctcacatgcgaggcccgtctgaactggattgttttcggagatcgttgcctgtgtatgag
cgtcaggacgagctggtccagaccatcagggagaaccaggtggtgctggtcctgggggag
accggctcaggcaaaaccactcagatcccccagttcctcctggacgactgcagtgggaat
gggattccctgccggatcttttgcactcagcccaggagactagcgacgatcgcggtggcg
gagcgtgtggcggccgagcgcggagagaagatcgggcagaccgtcggctatcagatccgc
ctggagagcagagtctctcctaaaaccctgttgacgttctgcacgagtggagttctgcta
aggacgctcatggccggagacgacgcgatgtctatggtcacgcacgtcattgtggacgag
gtgcacgagcgagacggcctgacggacttcttgctcacgaagatgaaggacatgcttcag
aagatgccgtcgctaaagctaatcctgtctagcgccgcgctggacgtcagtctgttcatc
agatacttcggcgcgtgtcccgtgattcacatcgaaggttgtccatacgaggtcaagcaa
ctctttctggaggatattctgcgaaccaccggatacaccaacaaagacatgattaaatac
aagaaggaggcgcagaaagaggagcggcagcagtcgtccctgacggagtggtgtgagtcc
catcaggccgacccggacccagagccggcccgggaaaggacgccatcttgtgtcctgcag
gagaacgacctcctggacgacggcggagacagtgtcttcagccagatgagcgagaaggac
gtggccacgctagagccgtggctcctcagggaaatggacgcctgcatctcaaacattttc
ttgaaccaagacgctgacgccttcatacagctcttcaatctcatcctgaacgagaacatc
agtgtggattacaggcacagcgagacgagcgccactgctctgatggtgtcctcgggtcga
gggttcctctgtcagatggagcaactgctcagcatgggcgcaaacgtcaacatcagagcc
tccaacggctggacggctctcgactgggcgaaacgcttcaagcaacccgaggctgtagat
ctgctggagtctcacatatggggtgttgaggcgggtcgtctggacgaggcgtctctggtc
cagtcctccacatctgatctgagctctgaggaccaggagcgtctcaaagcgtatcatcac
agctttgacgacgagaaggtggacctcgacctcgtcctgcacctgctcttcaacatctgc
cagagctccgacgagggcgcggtgttgattttcctgcccggctacgatgagatcgtgtct
ctgagagatcgcatcgtctttgatgataaaaggttcacggatcaccagcaaaggtttcag
gtcttcatccttcactccagcatgcagacgtcagaccagaagaaggttttgaggaacact
cctaaaggggttcgcaagatcattctctcgaccaacatcgcagagaccagcattacggtc
aacgatgtcgtttttgtcatcgactccggcaaagttaaagagaaagcctacgacgctatg
aataacgtgacgatgctgaagatggtgtggatctcgaaggccagcgctctgcagaggaag
ggcagagcggggcgctgcagaccggggatctgcttccatctcttcagccgtctgaggttc
aacaacatgctggaacatcagattccacagctactgcgcatgcctctacaggaactgtgt
ctgcacactaagctcctggctcccgtctcctgcccgatcgcggagttcctgtcgagagca
cctgagccgccgcacctgcacacggtcaaacacgccgtgcagatgctcaagaccatcgat
gccatggacccctgggagaacctgacggagctgggcttccacctggccgacctgcccgtg
gagccgcacctgggaaagatggttctgtgtgcggtggttctgaagtgtctggacccgatc
ctcaccatcgcctgtacgctggcccaccgagacccgttcgttctgccggctcaggccgct
cagaagcgcggagccatgctgtgccggaaacgcttcacggcgaacaccttcagcgaccac
atggccctgctccgggcctttcaggcgtggcagaaagctcgcagtgacggctgggagaga
gcgttctgtgagaagaacttcctctctcaggccacgatggagatcatcgtcgggatgcgg
actcagcttctgggacagctccgggccacaggtttcgtgcgggcgaggggtggcggggac
atccgggatgtgaaccagaactcggagaactgggccgtggtcaaggccgcactggtttct
gggatgtatcccaacctgatccatgtggagcgggacagcctgagcctcacgggctccaga
gagaagagggttcgcttccaccccacgtccgtcctgagccagccgcagtacaagaagatc
cctccagccaatggccaggcagcagcagtggagtccctgccctgtgattggctgatttac
gatgagatgacgcgcgcgcacaggatcgctagcgtcagatgctgctctgtggtcacgccc
ctgaccgtcgctatattcggaggatgtgctaaactcccgagctccgccttacaggaacac
agaggagccggtgacggtgtgaatgacagcagtgacagcgagatggaggatcgagccacg
gctcgtctggctcacatcagcatcgacgagtggctcaacttcaaactcgaccgagagatg
gcggagctggtgttcgggctcagacagcgctggcagagcttgttcctgcgccggatccgc
tctccgtctaaagcctgctctcagctggacgaggccacgatccgcacgctggtgtcggtg
ctgtcggcggaggagcaggtctcgggtctccagcagcccaccggcatcggccagagaccc
cgacccatgaactctgacgaggccccgcagacgacctgcaggagcacagaggagccgccc
agccccgacagacctcggctggcgtctcagatgaagaatcacagatcgctttactcgaag
ccgctgggagaggagctcgtcctgtttcacagcgctgacgactcttcatctccctcttct
gggaaaagctgcacgtctccgcccccgaggccgctgcgctcctgcgtgcgatacttcatc
atgaagagcagcaacacgaggaacatcgagctgtcccagcagagggggatctggtccacg
actcccagcaacgagcacaagctgacccgggccttccaggagagcagcgccgtgttcctc
gtgttctccgtgcagggctccggacacttccagggttacgcgcgcatgacgtcgtccatc
agtggcgagaggtgtctggactggggttcggtcggtctgggcggtgtgttcggggtcgag
tgggtccggaaggagaatctaccgttccagctcacgcagcatctcctgaacccctggaac
gacagcaagagagtccagatcagccgagacggacaggagctggagcctcaggctggaagt
cagttgctgcagttctgggagcgaatctga
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integrated database retrieval system
