Rhinichthys klamathensis goyatoka (western speckled dace): 130078685
Help
Entry
130078685 CDS
T09701
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130078685 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130078685 (lig3)
Enzymes [BR:
rkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130078685 (lig3)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
130078685 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130078685
NCBI-ProteinID:
XP_056100251
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MPSFWFGGIVRTLSRSSLPKLFRETLFRATLNSQYLQCSRALTFPWGFASSPSGVFFCVP
QIRQFTLSTGSYFRVSWPKWQLEQPDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLEKARATTKKIEDITELEGWEELQDEDKELINKHV
SELAAKTNASPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPTQGSALSAQLCDPNHKDNLLREFRKLCALVAEKSGYNAKTEIIRDFLTKGSGGDKFRG
DLYLTLKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRMFFEDS
KSFPPAAKSLLTIQEVDASLCRLAQLTKEDDQQTELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSVEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFPGGHSMILDAEVLLIDTQSSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGQYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESR
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVT
AGPSKPSKNDKSSSGGESGGSSPSTSHGASTANKPKNGHTPKAKAVKTESSSPAVKRKLP
TEKQDAKKIKKEPAHSNGQSKLKSIQTTDPKNEKTLLDIFTGVKLYLPESVQDFEKLQRY
FLAYDGDLVPQYDSGSATHTLEEPEDDSSAQRVTSNWIWECIRKRRVVPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtttttggtttggcgggatagtgagaacactaagcagatcatctttgccaaaa
ctttttagggaaacattattcagagcaacactaaatagtcaatatctccagtgctcgaga
gctctcacgtttccgtggggatttgcatctagccccagtggcgtctttttctgtgtgcca
caaattcgacagttcactctcagcaccggctcatatttccgtgtttcttggcctaagtgg
caacttgaacaaccagacatggcagagcagagatactgcgtggaatatgccaaacgtggc
acggctgggtgcaagaaatgcaaagacaagatcatgaaggggctggtccggattggtaag
attgtgccgaacccgttcagtgagtctgcaggggaaatgaaggagtggtaccatgtaaag
tgcatctttgagaagctggagaaagcgcgcgccaccacaaagaaaatcgaggacatcaca
gagctggagggatgggaggaacttcaggatgaggataaagaactaatcaataaacacgtt
tcagaactggcagccaaaaccaatgcaagcccaaagaagaaagtgcaagctaagttaaac
aacagtgggcagctgtcagcaccgctagctgatccaacagtcaacgctcctcgcaagttt
tctggcttcacagctaccaaggccggttcctcttcctccagtcctggaccgtctccagcc
aaacccactcagggcagtgctttatcagctcaactatgtgaccccaaccataaagacaac
ttactgcgggagttccgcaaactctgtgccttagtcgcagagaagtcaggctacaacgcc
aaaaccgagatcatcagagacttcttaacaaagggctctggtggagacaaattcagagga
gatttgtacttgacgctgaagcttctcctcccaggagtggttaaaaatgtgtacaacctc
aatgacaaacaaattgtcaagcttttcagccgcatattgaattgcagtcaggatgagatg
gtgcaagacttggaacagggagatgtttcagagacagtgcggatgttttttgaggacagc
aagtctttccctcccgcagccaagagtcttttgaccatccaggaggtggatgcctcactg
tgccgtctggcccaactcacaaaggaggatgatcagcagacagagctgcaggacattgct
aaaaaatgtaccggaaatgatctgaagtgttacattcgtttggtcaaacatgatctgaaa
attaactcgggggctaagcacgttttggatgctgtggaccctaacgcatatgatgccttc
aaagcctcccgtaaccttggtgacgtaatcgacagggtgctacggaaccagcaggacgcc
tctaatggaacagggccccgaaagatccttagtgtggaggcgtctctgatgacccccgta
cagccaatgctggcagaggcatgtaagtccattgagtatgccatgaagaagtgtcctaat
gggatgtactctgagatcaagtatgatggtgagcgtgtgcaggtccataagaatggcgat
cactttagttacttcagtcgaagtctcaaaccagtacttcctcacaaggttgctcatttt
aaagagttcataccgcaggcatttcctggtggccatagcatgatccttgatgctgaagtt
cttcttattgatacccagtctagcaaaccactgccatttgggactcttggagtacacaag
aaagcagctttccaggatgctcaagtgggtctgttcgtgttcgactgcatttattttaat
ggtgtcagtctcatggacaaacctctctgtgaaagaagaaagtttctccatgacaatatg
gtggaagttcctaacaggattctgttctcagaaatgaagcatgtcacgagagctgctgac
ctggcagaaatgatcacacgtgtcatcagagagggattggaggggttggttctgaaggat
ctcaaggggcaatatgaaccaggaaagcgtcactggttgaaggtgaagaaagactatctg
aatgaaggagcaatggcggacaccgctgaccttgtggtgcttggagctttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggctgctatgacccagaatccaga
aagtggtgcactgtgaccaagtgttcgggaggctatgatgacgccacgttagccagactg
cagaaggagttggacgttatcaaaataggcaaggatccaagcaagatcccaggatggttg
aagattgtcaaaaactattaccctgatttcattatccgtgatccagaaaaagcgccagtg
tgggaaataactggagcagagttttccaaatcagaaatgcacacagcggatggcatatcc
atccgcttcccacgatgcactcgaatgcgtgacgacaaggactggaagacagccactaac
cttcagcagcttaaggagctgtatcgaatctcgaaggagaactgtgattttgaggtgaca
gctggtccgtccaaacctagcaaaaatgacaagagctcctcaggaggcgagagtggagga
agctctccctcgacatctcatggagcttccacagctaacaagcccaaaaacggtcatacc
cccaaagcaaaagcagtgaaaacagaatcatcctctcccgcagttaagaggaaactaccc
acagagaaacaagatgccaagaagataaaaaaagaacctgctcacagcaacggacaaagc
aaattaaagtcgattcaaacaaccgacccaaagaatgaaaagacactactggatattttc
acaggtgtgaagctctacctcccagagtcagtacaggactttgagaagcttcaacgttac
ttcctagcgtacgatggtgatctggtgcctcagtatgactctggttcagccacacataca
ctggaagagccagaggatgacagttcagcccagagggtcacctccaactggatctgggaa
tgcatccgcaagaggagggtggttcccccctgctga
DBGET
integrated database retrieval system
