Rhinichthys klamathensis goyatoka (western speckled dace): 130078779
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Entry
130078779 CDS
T09701
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130078779 (pdzrn4)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130078779 (pdzrn4)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130078779 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
130078779
NCBI-ProteinID:
XP_056100416
LinkDB
All DBs
Position
Unknown
AA seq
791 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKEPIVVQVLRRGPSGRNQ
NSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIQTMEHEYYDC
PEYVASTQAEVDRAVEFECEEVELCRMNSQEKLGLTLCYRTDDEEDTAIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNREEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHHD
FLEELKMEILEEQKKDAKWSKRHDEASASTDTATCSSSILEKDSGVKCSFEESSEYEFLS
HPQTQTQKQLRDRWEAGSHLVPMDTVSLARQEKGQEGRLSENGLECDHFQQLLELKCQIR
NGGECGLVYRRSSTIECSLTEQSGSGVARELHMLNEELRSIELECQSIMQAHQLRRSKHD
SPRTDKESRLRRGKLADINEYPERLQSEKLRDKDSSSAYNTAESSRSTPLGTEGSPDHSL
QRRVHLTNQRNLRSTQHLQSPYNSPILSLPSQSSPSYSRGHTYTSSTPPLQTPITSPGSQ
GPSQAFSSSLEQSPSNPSESDPALPADDERCEKERNRNRVATARHYHSPCHSNTTTTQPP
GTRHYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSQPGRIEWKVKVRADGTRYVAR
RPARDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAREQRRRREF
MQRSRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGARAPEGTK
VHNAFLSVTTV
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacttgtgcacactgcagaagagagaggagcactacaagctgctttacgag
attgcccaggtgaatggacgtgaattttccaagtctggacatgagggaacggtggaggcc
atgcgaaaggaaccaattgtggtgcaggtgctgaggcggggaccctccggccggaaccag
aacagcctacaggaagtgtgtgtggtggacgtgtgtactcagacggacatcacctttgag
cacatcatggctctggcaaagatgagacccactaccccacctgtgccagacatctgccca
ttcctgctgtcggacagttgtcattccattcagactatggagcatgaatattatgattgt
ccagaatatgtggccagcacccaggcagaggtggacagggcagttgaattcgagtgtgag
gaggttgagctctgtcgaatgaacagccaggaaaaactgggcctgactctctgttatcgt
actgatgatgaagaagatacagccatttttgttggtcaggttgaactcaacagcatagct
gcaagggatggacgcatcagagagggagacagaattttacagataaatggtcatgacgta
cagaacagggaagaggctgttgctctcctttcaaatgaaaattctagatccatagtgtta
ctcgtcaccagacctgaagggcagatggatggaagctggctcgatgaggaccatcatgat
tttctagaggagctgaagatggagattttagaagaacagaaaaaggacgcaaagtggtca
aaaagacatgatgaagcctccgcaagtacagatacagcaacatgttcctcttccattctg
gagaaggacagtggtgtgaaatgcagctttgaggagagttctgaatatgaatttctctct
catccccaaacacagactcaaaaacaacttcgagacaggtgggaagcgggctcacatttg
gttcctatggacaccgttagcttagccaggcaggagaagggtcaggagggcaggctgagc
gagaatgggctggaatgtgaccatttccagcaactcttggagctaaagtgccagatccgt
aatggtggagaatgcgggttggtctacaggcgaagtagtaccatcgagtgcagcctgacg
gaacagagtggaagtggagtggcacgggagctgcacatgctcaacgaagagctgcgcagc
attgaacttgagtgccagagcatcatgcaagcccaccagttgcgccgaagcaagcatgac
tcgccccgaacggataaggaaagtcgactgcgccgtggcaagcttgcagatattaacgag
tatcctgagagacttcaaagtgagaagctcagagataaagacagctctagtgcctacaat
acagccgaaagttcccgctcaactccactgggaacagaaggatcacccgaccactcgcta
cagcgtcgagtccacctgaccaatcagaggaacttgcggagtacccaacacctgcagagt
ccctacaatagtcccatcttgtctttacccagccaaagtagcccttcttacagtcgtggc
catacatacaccagctccacaccacccttacagacccccatcaccagtcccggttcacaa
ggacccagccaggccttctccagcagcttggaacaaagccccagtaacccctcggagtca
gacccagcgcttcctgctgatgacgagcgctgtgagaaagaaagaaaccgtaatagggtt
gcaactgctcggcactaccattcgccctgtcacagcaacaccacaacaacccagcctccc
ggcacacgccattaccagagttacctacagctcctacaacaacattcctcttcctctctg
gaatactcccagagccagcttagcctcctcagcctccgtggacggcctggaccgtcacaa
cctggccgaatcgaatggaaggttaaagtgcgagcagacggaaccaggtatgtggcacgt
cggcccgcacgagaccgtatcctacgcgaacgagccttacggatccgggaggagcgcagc
ggtgggatgactacagatgacgacgcagtcagcgagctgaagatggggcggtactggagt
aaagaagaacgcaagcagcagttagcacgcgcaagagaacagcgacgcaggagggaattc
atgcagaggagccggcttgagtgcctcagggagaccatggggacggcaagtggggaagtc
agcatcctggagctcagccataagaagatgctgaagaaacgaaacaagaagatccttgac
aattggatgaccattcaagagctcatgagccatggagcacgagcacctgagggcaccaaa
gttcacaacgccttcctttcagtcaccacagtttag
DBGET
integrated database retrieval system
