Rhinichthys klamathensis goyatoka (western speckled dace): 130078799
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Entry
130078799 CDS
T09701
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130078799 (rbm39a)
Spliceosome [BR:
rkg03041
]
Common components
Common spliceosomal components
General mRNP proteins
130078799 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
PRP38_assoc
RRM_occluded
RRM_5
RSRP
Rtf2
EPL1
RBD_DEAH11
RRM_7
CDC45
Motif
Other DBs
NCBI-GeneID:
130078799
NCBI-ProteinID:
XP_056100458
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MADDLDIEAMLEAPYKKDDIKSISTNGHEERSKKKKKSKSRSRSREKKRSKSRDRKKSHD
HRRSRSRERKRSRSRERRRSRSRSRERGGRYRAPFSGLKFNGGPRGKTGPPPAIKLSRRR
SRSRSPFKKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRI
ISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQK
GSSGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECA
KKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLA
EGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQAMNLPSQPIATHCFQ
LSNMFNPNSENDLGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAA
VSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacatcgaagcaatgctcgaggctccatataaaaaggatgacatc
aagtccataagtaccaatggccacgaggagcggagcaagaaaaaaaagaagagcaagagt
cgcagcaggagccgggagaagaagagaagcaagagtcgcgaccgcaagaagagtcatgac
cacaggaggagccgcagcagagagcggaagcgcagccgcagcagggagagacgccgcagc
cgatccaggagcagggagcgtggcgggcgctacagagctccgttttctggcctgaaattt
aacggtggtcccagagggaagactggcccacctcctgccatcaaactaagtcgtagaagg
tctaggagccgcagtccattcaagaaagacaaaagccctataagacagcctattgataat
ctcacccctgaggaaagggatgcgcgcacagtgttctgcatgcagctggcagctagaatc
cgaccacgagacctggaggaattcttttctgcagtgggaaaagtgagagatgtgcgaatc
atctctgacagaaactccagaagatccaaaggaattgcttacattgagtttgtagattcc
acctctgtacctttggcaatcggtctgtctggtcaaagacttcttggagtaccaatcatt
gtccaggcttcacaggctgagaagaacagagcagctgcattggccaacaacttacagaag
ggcagttctggacctatgagactgtatgtcgggtcattacacttcaacatcacagaagac
atgctccgaggcatctttgaaccatttggacggattgatagcattcaactgatgatggac
agtgaaacgggacgatctaaaggatatggctttatcacattttctgatgccgaatgtgcc
aagaaggctctggaacagcttaatggctttgagttggctggcagaccgatgaaagtggga
catgtgacggagcgcactgatgcctccaccgccagctccttcctggacaatgatgagctg
gaaaggactggtattgatctgggaactaccggaagacttcaactcatggccagactggcc
gaaggtacaggtctgcagatcccacccgctgcacaacaggcccttcagatgagtggctcc
atggtagccatggctgcagctactgctgctatgaaccctggattgagttttaacatcaat
gtgcccacaaaccaagctatgaatctaccatcgcaaccaattgcaacacactgtttccag
ctgtctaacatgttcaatccaaactcagaaaatgatcttggttgggaaatcgaaattcag
gatgatgtcattgaagagtgcaacaaacacggtggagtcatacatatatatgtggacaag
aaatccgctgaaggtaatgtctatgtgaagtgtcccaccattcctgctgccatggcagca
gtcagtgcgttacatggacgctggtttggaggtaaaatgatcacagcagcttatgtccct
cttcctacataccacaaccttttcccagagtcagtgcaggctacacagcttcttatgccc
agtcgccggtga
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