Rhinichthys klamathensis goyatoka (western speckled dace): 130079557
Help
Entry
130079557 CDS
T09701
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130079557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130079557
03032 DNA replication proteins [BR:
rkg03032
]
130079557
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130079557
mRNA cycle factors
Common to processing body (P body) and stress granule
130079557
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
130079557
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
130079557
NCBI-ProteinID:
XP_056100841
LinkDB
All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDIIISGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHAGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSLCSVLPDSLIFKMVVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVPPLRTDNTDDAD
ARDHSGAALSEEKTLQNGSLEEEDDEEEDKENEEDVTKGNGSTVGTKKSLEKKRSAEEKQ
KQKRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEGGGPVDGLGATRVQINTLGRE
GRKGPLAEDGSFESGSEEEEGGTAFDVETDSDMNSQESRSDLEDMEDAENAPQQQQQEEN
EQPQPSREDNSTPPVTNGPLVSNDASISSNLQAMSSQLFQAKRCFRLAPTFSNVLLRPAA
ATNPTPDSNPAPIQEATPPTGETPKHMSPEIANGTNDKDPDSDSEDSVHSNQSLPSEKTL
SERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEGSKILET
DLGLNKDVTELLSECEQPGLVQTLLLPEDLALRHLPALSVAHRRLDFTSQRPPLTPLDEC
VVRVCCIRSFGHFLTSLQGNVLHFNPEAGIFTGISSQRRSILIQQAKAQ
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagccagaggccaaagtgcttcatattaagcggctg
tacagggctgtggtggaaacggtgcacaagttggatattataatcagcggcaagtcgtcg
tatagggaggtcttcaaacctgagaatatcagcttgaggaacaaattgcgggaactttgt
gtaaagctgatgttcctgcatcctgtggactatggacgcaaggcagaagagctgctatgg
aggaaggtctactatgaggtcattcaggtcatcaagaccaataagaagcatattcacagc
cgcagtgctctggagtgtgcctacaggactcatctgatcgctggggtgggcttctttcaa
cacctgttgctctatatccagtcacactatcagctggagttacaggactgcatcgactgg
acacacgtcaccgacccactcattggtcgtaagaaaccagtctcagccacccctaaagag
atggagtgggcccagatggcttgtcacagatgccttgtgtacttgggagatctcgcgcgg
taccaaaacgaactggcgggagtggaagcagagcagctggcggagcgcttttatcaccag
gccctgtctgtcgcacctcacgccggcatgccatttaatcagttgggtacgcttgctgga
agtaaattttataatgtggaggctacttactactacttgcgctgtattcagtcagagaca
cccttcgatggcgcttatgggaatttaaagcgtctgtttgacaaggcagccaagatgtac
caccaggtgaagaaacaagagatgaagaaactttcaccatcacgccagaggtcaaaagac
atcaaaagactgctggtgagcttcatgtatttgcagagcctgttgcagcccaagaacagt
ctgatggagacggagctgacgtcactgtgccagtccgtgctggaagactttaacctggtg
ctgttctacctgccccttcctgctcacggcagccagtcagccagcgaggaggaggaagag
cacgactcgctctgttctgtgcttcctgacagcctcatattcaagatggtggtgacttgc
cttatggtggtgcacagcctgaagagaggggcttcaaagcagtacagcgcctccatcgct
ttcacattggctctgttctcccatttggtcaatcatgtcaacattcgactgcaagctgaa
ctggaggagggagagagtgacgtcccacccctgcgcactgataacactgatgacgctgat
gccagagaccacagtggtgctgctctctcagaggagaagaccctgcagaacggctcgctg
gaagaggaggatgacgaagaggaggacaaggagaatgaggaagatgtgactaaggggaac
ggaagtacagtggggacgaagaaaagcctggagaagaagagatcagctgaggagaagcaa
aaacagaagcggaagttctcacggctctccatgcttcgccgcagacgctgcgctcacaag
gaggacgagagcgacctgagcgagggatttgagagtgacgaagaagaggacgaggaaggc
ggcggtccggtcgacggcctgggagccactagggtccagataaacactttaggaagggaa
ggacggaagggaccactggcagaggatggcagcttcgaaagtggttcagaggaggaggag
ggcggcactgcctttgacgtcgagacggattccgacatgaacagtcaggaatctcgttcg
gacctggaagacatggaggatgcagagaatgcgccacaacaacagcaacaagaggaaaac
gagcagccgcaaccatctagagaggacaactcgacccctcctgttacgaacggcccttta
gtgtctaatgatgccagcatcagcagtaacctgcaggccatgtcctctcagctcttccag
gcaaaacgttgcttccggctcgcacccacctttagcaatgttctgctccgccctgcggct
gccactaaccccaccccagactcaaaccccgccccaatacaagaagccacacctcctact
ggagaaacaccgaagcacatgagtccagagatcgctaatggaaccaacgacaaagatcct
gactctgattctgaggacagtgttcacagcaaccagtcgcttcccagtgagaaaaccctt
tctgagcgactggagattctgaccaatcagggtctcatccaggtggtgaaggtctttttg
gattggctgaggacgaacactgatatcatcctcatgtgtgctcagagttctcagagcttg
tggaacagactttcagtgctgcttaatctacttcctgagggcagcaagatattagaaact
gatttaggtctgaataaggatgtaacagaactcctgagtgagtgtgagcagcctggtttg
gtccagacactgctgttgcccgaggatcttgcccttcgccaccttcctgccctcagcgta
gcccatcgacgcctggacttcactagccagagacccccacttacccctctggatgagtgt
gtggtgcgcgtatgctgcattcgcagctttggtcacttcctcacaagtctccaaggcaac
gtgttacacttcaacccagaggcgggcatcttcaccggcatcagcagtcagcgcaggagc
atcttgattcagcaggccaaggcccag
DBGET
integrated database retrieval system
