Rhinichthys klamathensis goyatoka (western speckled dace): 130080505
Help
Entry
130080505 CDS
T09701
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130080505 (jmjd1cb)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130080505 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
130080505
NCBI-ProteinID:
XP_056101840
LinkDB
All DBs
Position
Unknown
AA seq
2545 aa
AA seq
DB search
MVVGKRFLCVSGEEPLEPAHIARWSWRTGVIRAVTHRDHDNPELTVYVEFDDLEWEKREW
VKVYEDFQIFLLEHQLVWAKRKEGAQLQGTKAKQIQWPALTFKPLVGKTVFGSITAIEFF
SDRHLDFLTDEGAFQPYQDELDSLSPVLRDYPHLHEEVKAWVKDQKVQEIFMQGPYSLNG
YRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPSMVQMTFLDDVVHSLL
KGENIGITSRRRSRSSQNSNTAHQTTGGRPSGSTGITQGHYTRAQANSPRPVMNSSGSTP
KQASQAQQQQQQSQHVQQQGSQQHQQQQQSSPGQQRGPRSSRRKGSDSSVPDEEKIKDEK
SDSGGKDPSKNKSKQTNKRRKADEEDKKGSLKRLKTEASDLSESSDSENSNKQSVDSSSE
HSSENELKCKSTSKVPEEVEKSQGSKPVDELSVINRLSPWDEMQDKSVKPVAVEVTQLAD
SERSGEKRSQLPPPASCTQNQASVPAEVQSCIVEMKSTVKTLPKDHYCTGTPRTHTPKCV
IDITEDANTQPSSRENSEAVSALLASQKCDAYNPESRHLVLNASHSECRRPEGEQQQNAR
SIGSKIEFAHSEVIRPVTSVSESAALGERGKLQQQYTSMVIKNASLTEDIRKTHKLSPSP
ESPKPKSNSSPDILKPKCNPSPDIIKSKTHSIHESSKPKPNTSPEVSKHKPRHPENLPTI
GRLALKPDPDVPRSSFKPVLARGALCESTKSPLVVDKNEHFTVYRDPALVRPESDGNHVA
YLHPHLHSLHGSSHTTCLTPSSHHPSHLLPSSSMSHSVHHPHLLPSVLPTISPASLLGSH
SRLDSTGLGHLALAHHHSHQQQQFIQQQQGLLAQTHGGASYNQLGLYPIIWQYPNGTHSY
QSGYKWVHPENAVNSDSSLRRNSPSPWLHQPTPVTSADSMGILSHVPGRPASAEPHRPIK
ISSHSSPPLSKTPGELHKEDQDKNVFGDPLRGLSSVHLKQEPDRSRTPNNKELHRLYMEP
PHSKQQLPPRMPQDGPDRTSKYKEENRRILLESIEMAPFTAKIRAGETERDPYSRISSQP
KSHEKEVEHSVADLYKYKHSISQSLPQTNYFTTLSNSVVNEPPRLFQSKDLNPYFDKAPA
ASSPLSLSSYNSSHTKSLSKPPPLIKHQPEGEGLVGKITEQLSQQAPIHSLSTSVVTLSE
RCSPAISPSSQPKGMPALRRAPVFRPPTQKAIDRKEGPYGRLSPPTLTPIQPVSSAGKVS
EQQKPPTLLPELRDEKSGAELGSAESWQTTGEAKSHEKVAWHSENTQGKPQAAMASVIVR
PSTCIKYDSSLGPKIASKEQLGGRLFAGRTQSDCLKVAESWESGRVILPNTNLEDPSDQY
NKNLIRASPGVIPSSVAVVANSVCNTRTNEAISTASSTFSTQSYNGADLSFSISGTSGSS
RLESTGSKIHPPAVVESQEGGSRTTSPSSLPQACSAGSTQAYSKNYVHLKKAKAALAAAQ
SRGSSSASESESSSVRSSQDSPTIAQDNSMPSNPPSKASPLPNGQPAQVCQSNYHKLKKA
WLTRHSEEDKNTNKSEKGGNPISELIKPCSVNLIAPAPSDVDLGKDSKVQEDKLSQEDRK
TRRTLKRSYESGSESGDDSDSSESKLEQRTKRQPKPTYKKKQNDLQKRKGDNEKEEDEVK
PNGIFRSAKEKTKLKLASTNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCR
ECRSVRTKKGEESAHSPVFCRFYHFRRLSYSKNGVIRIDGFSSPDQYDEEALSLWAPDGY
EENNLDLETSKYILSYIGDKFCQLVLTENTATTWIKKDAKIAWKRAVRGVRESCDACEAT
LFNIHWVCQKCGFVVCLDCYKAKERKSSKDKELYTWLKCVKGQPHDHKHLMPTQIIPGTV
LTDLVNAMHMLREKYSIKSHCSCAVKQNTLFNKLPCTNGVSQVLQNVLNHSNKISLCKPE
GGQQNSSLKVEANGGSSPVSDTSTDSKFTPPESQSPLHFLADLAEQKSREEKKENKESLV
GKIKEEKDQSDPLESLHSKASSLEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSTASQ
IVKSGRSMPNILDDIIASVVENKIPAGRGTKLNLKHEPLEEPKAEKKKAVEETPKLYTDI
SHCWLYERKLLWLKDHRNSNNWKLFRECWRQGQPVLVSGVHKKLNASLWKAESFNQEFAD
HQGDLLNCKDGVMSNSGVKEFWDGFEDLTKRPKSKDGESVVYRLKDWPSGEEFMALMPSR
YDDLMKNLPMPEYSDPEGNLNLASHLPSFFVRPDLGPRLCCAYGVAASQEQDFGTASLHM
EVSDIVSVLVYVGVAKGNGVLSKTGVLKRLEEEDLDDNVKKRLKDSSETPGALWHIYTSK
DGEKIKEFLHKVAKEQGVEIPADHDPIREPGWYLSRKLRQRLLDEHAVQGWTVVQFLGDS
VLIPAGALHQVQNLHSCVQVINDFVSPEHVVHSFHLTQELRSSKEEINYEDKLQVKNIFY
HCVKNAVGTLKSCCAEEEEEEETNS
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcgggaagcggttcctgtgcgtgagcggagaggagccgctggagcccgcgcac
atcgctcgctggtcatggcgaaccggagtcatccgagccgtcactcaccgagaccacgac
aatcccgaactcacggtgtacgtggagtttgacgaccttgagtgggagaagcgtgagtgg
gtcaaggtgtacgaagacttccagatctttctgctggaacatcagctggtttgggccaaa
aggaaggagggtgcccagctgcagggaacaaaagccaagcagatccagtggccagctctg
acgttcaagcctctggttgggaagacagtgtttgggtccatcacagccatcgagttcttc
tctgacagacacctggacttcctgacggatgaaggagcctttcagccctatcaggatgag
ttggacagtttaagtccggttcttagggactatccacatctccatgaagaagtgaaagcc
tgggtgaaagatcaaaaagttcaggaaatttttatgcaaggtccctattcattgaatggc
taccgtgtacgagtttacagacaggactcagccacccagtggttcacgggcatcatcacc
caccacgatctcttcagtcgcactatggttgtcatgaatgaccaggtactagagcctcag
aacgttgacccttccatggtacagatgacctttctggatgatgtggtccattctttattg
aaaggagaaaacatcggtatcacgtcgcgacgcaggtctcgctctagccagaacagcaac
actgcccaccagaccacaggagggagaccaagcggctctacaggaatcactcagggtcat
tacacacgtgcccaggccaacagccccagacctgtaatgaattcctctggctccaccccc
aaacaggcctctcaggcccagcagcagcagcagcaatcccagcatgtgcagcagcaggga
tcccagcaacaccagcagcagcagcagtcctcaccaggtcaacaacgcggcccacgatct
tcacgtcggaaaggttccgacagcagcgttccagatgaagagaagatcaaagatgaaaaa
tcggacagtggaggaaaagatccctctaaaaacaaaagcaagcagacaaacaagaggagg
aaagcagatgaagaagacaagaagggtagtctcaagcggctcaaaacagaagcgtctgac
ctctctgagagcagcgactctgagaactctaacaagcagagcgtagactcttcatcagag
cacagttcagagaatgagctcaaatgcaagagcacttcaaaagttcctgaggaggtggag
aagtcccagggatccaagcccgtggacgagttgagtgtaatcaacaggctgtctccctgg
gatgaaatgcaggataaaagcgtcaagccggtggccgtggaggtaactcagctggcagac
agtgaacggtctggagaaaagagatctcaactgcctcctccggcctcctgtacacagaac
caagcctctgtaccggcagaggtccaaagctgcattgtcgagatgaaaagcactgtgaaa
accctccccaaggaccattactgcacagggacacctcggacgcacacgcccaagtgcgtg
attgatatcacagaggatgcaaacacgcagcccagttccagagagaactctgaggccgta
tcggccttgttggcatcacagaagtgtgatgcctacaaccccgaatcaagacatttggtg
ctaaacgcctcccactcagagtgcaggaggccggaaggcgagcagcagcagaacgctcgc
agcataggcagtaaaattgaattcgcccactctgaggtcataaggccggtgacatcagtg
agtgagtcagcagccctgggcgagagagggaagctccagcagcagtatacatctatggtc
attaaaaatgcctcgctaaccgaggacatcaggaaaacccataaactcagtccttctcct
gaatcgcccaaacctaagtccaactcgtcccctgacatcctcaagcccaagtgcaatcct
tcacctgacatcataaagtcaaaaactcacagcattcatgaatcctccaagcccaaacca
aatacatcccctgaggtgtccaaacataaacctcgccaccctgaaaacctaccaacaata
ggccgtttggcgctcaaacctgatccagatgtaccccgctccagttttaagcctgtgcta
gcccgcggggcactctgcgaatccacaaaaagccctcttgttgtcgacaaaaatgagcat
tttacggtgtacagggaccctgcgttggtgcgtcctgaatcggacggcaaccacgtggcg
tacctgcacccacacctgcattcactacatggttcttctcacaccacgtgtctcacaccc
agctcacaccacccgtcccacctcctcccttcttcctccatgagccactcggtgcaccac
ccacacctgctgccctccgtactgcccacaatttcaccagcctctctcctgggcagccat
tcccggctggattccacaggactcgggcacctggccttggcccaccaccattcccaccag
cagcagcagttcatccagcagcaacaagggttgctggcccagacacatggaggtgcctca
tataaccagcttggcctctatcccatcatctggcagtacccaaacggtacccactcctac
caatctgggtacaagtgggtacatccagagaatgctgtcaattcagactccagcctacgg
aggaactctcccagcccctggctgcaccagcccacccctgtaacctcagcagacagcatg
gggattttgagccatgtcccgggcagaccagccagtgcagagcctcatagacccatcaag
atcagctcacactccagcccgccactctccaaaacccccggagaactccacaaagaggat
caggacaagaatgtgtttggagaccctctgcgtggcctgtccagtgtccaccttaagcaa
gagccggaccgcagccggacacctaacaataaggagctacaccgcctctacatggagcca
ccccacagcaagcagcaactaccaccacgcatgcctcaggatgggcccgaccgcaccagc
aaatataaagaagagaaccgccgcatccttctggagagcattgaaatggcccccttcaca
gccaagattcgcgccggagagacagagcgtgacccctactcccgcatttcctcccagccc
aaaagccatgagaaagaggttgagcactctgtggctgatctgtacaagtacaaacactct
atatctcagtccctcccgcaaaccaactacttcaccacgctgtcaaatagcgttgtaaac
gagccaccacgacttttccaatccaaagatctcaatccgtacttcgacaaggcacccgca
gcctctagccccttgtctttgagctcgtataactctagccacaccaagtctttgtccaag
cctccccctctcattaagcaccagccagagggagagggactggtgggcaagatcaccgaa
cagctcagtcaacaagcacccatacactcactcagtacctcagtggtgacactcagtgaa
cgctgcagcccagccatctctccctcaagtcagcccaagggcatgccagccttgcgtaga
gcaccagtctttcgcccacccacccagaaagcgattgaccgcaaggaggggccctacggt
cgcctttccccacccacactcaccccaatccagcctgttagctcggcgggaaaggtgtca
gaacagcagaaaccacccaccctgctcccagagctcagggacgaaaaaagcggagccgag
ctgggctcggccgaatcctggcagactaccggggaagcaaagagccacgagaaagtggcc
tggcattcagagaatacccaagggaagccacaggcagccatggcatctgttattgtccgc
ccttctacttgcataaaatatgacagttctctaggtcccaagattgcctccaaagagcaa
cttggtggcagattgtttgctggccgcactcagtcagactgcctgaaagtggccgagagc
tgggaatctgggagagtcatcctaccaaacacaaatttggaggatcccagtgatcagtac
aacaaaaacctgattagagcatcaccaggtgtcattcccagctcagtagcagttgtggcc
aattctgtgtgcaacactaggactaatgaagcaatttctactgccagcagcacgtttagc
acgcagagctacaatggagcagatctttcgttctccatctctggcactagtggtagttct
agactggaaagcactggttccaaaatccaccctcccgctgttgttgagtcacaggaggga
ggttcgagaacaacctcccctagttcgctgcctcaggcctgctctgctggctccacacag
gcctactcaaagaactatgttcacctgaagaaggccaaagcggctctggctgcggcacag
tctcgtggttccagcagcgcctctgagagcgagagcagtagtgtcagatcctctcaggac
tcgcccaccattgcccaggataattccatgcccagcaatcctcccagcaaagccagccca
ttgcccaacggacagccagcacaggtgtgccagtctaactaccacaagctcaagaaagcc
tggctcacacgacactcggaggaggacaaaaacacaaacaaatctgaaaaaggtgggaat
cccatatctgagctaattaagccatgctccgtcaacctgattgctcctgcacctagtgat
gtggatctaggcaaggacagcaaagtacaagaggacaagctgtctcaggaggacagaaag
acacggcgtaccctcaagcgttcctacgaatcgggctcggagagcggtgatgactccgac
tctagtgagagcaagctggaacaaaggactaaacggcaacccaagcccacttacaaaaag
aagcagaacgacctgcagaaaaggaagggagacaatgaaaaggaggaggatgaggtgaag
ccaaatggtattttccggagtgccaaggaaaaaaccaaactcaagctggccagtactaat
ggcattccccgatcagtactgaaggactggaggaaagtaaagaagctaaaacagacgggc
gagtccttcctgcaggatgactcgtgctctgaaatcggacccaacttacagaagtgcagg
gagtgccgctccgtccgcaccaagaaaggggaagagtctgcccactcacctgtcttctgc
cgcttctaccacttccgtcgcctctcatacagtaagaacggagtgatccggattgatggc
ttctcctctcctgatcaatatgatgaagaggcgctcagtctctgggctcctgatggttat
gaagaaaacaacctggacctggagacctctaaatacatcctcagctacattggagacaaa
ttctgtcagctggttttaactgagaatactgcaactacatggataaagaaagatgccaag
atcgcctggaaaagagcggtgcgcggagtgagagagagctgcgacgcatgtgaagccaca
ttgtttaacattcactgggtctgccaaaaatgtggatttgtggtgtgtttggactgttac
aaagccaaggagagaaagagctccaaagataaagagctgtacacttggttgaagtgtgtc
aagggacagcctcatgatcacaagcacctgatgccaacacagatcattccaggaactgtt
ctaacggacttggtgaacgctatgcacatgctcagggagaagtacagcattaaatcacac
tgctcgtgtgctgtgaagcaaaacaccctcttcaacaaactgccatgcaccaatggcgtc
tcccaggtgttacagaacgtgctcaatcacagcaacaaaatctctctgtgtaagcctgag
ggcggccagcagaactcgtctctgaaggtggaggccaatggagggagcagtcccgtcagc
gacaccagcaccgacagcaagttcaccccgcccgagtcccaatcgcctctgcacttcctg
gccgatctggccgagcagaagtcccgcgaagaaaagaaggaaaataaggagtcacttgta
gggaagataaaagaggagaaggatcagtcagatcctttggagtctctgcacagtaaagca
tcatccctggagcagggatcaaccctacgagacctcctcaccaccaccgcaggcaagctg
cgcctgggctccactgatgctggcatcgcattcgctcctgtgtattccactgcctcacag
attgtcaagagtggtcgcagcatgcccaacatcctggatgacatcatcgcctctgtggtg
gagaacaagatcccggcgggccgtggcaccaagctgaacctgaagcacgagcctctggag
gagcccaaagcagagaaaaagaaagcagtggaagaaacgcccaaactgtacactgacatc
tctcactgctggctctacgaacgcaagctgctctggctcaaagaccaccgcaatagcaac
aactggaaacttttcagggagtgctggagacaaggacagcctgtgctggtctctggggtg
cacaagaaactcaacgccagcttgtggaaggcagaatccttcaaccaagagtttgctgat
caccagggagacctcttgaactgcaaggatggagtaatgtccaactcaggagtcaaagaa
ttctgggacgggtttgaagatctcacgaagcgtcccaagtctaaagatggagaaagcgtg
gtgtatcgactgaaagactggccctcaggcgaggagtttatggctttgatgccctccagg
tatgatgatctcatgaagaacctccccatgcctgagtattcagaccccgagggaaacctc
aacctggcctcccatctgccctccttctttgtgcggccggacctgggcccgcgcctctgc
tgcgcttacggtgtggcggcatctcaggagcaggactttggcacagctagcctgcacatg
gaggtgtctgacatcgtcagcgtgctggtgtatgttggagtggctaaagggaatggtgtc
ctttccaaaacgggagtgctgaagaggctggaggaggaagacctggatgacaacgtaaag
aaaagattaaaggactcgagcgagactcccggagccttgtggcacatctacacgagcaaa
gacggcgagaagattaaagagttcctgcacaaggtggcgaaagagcagggcgtggagatc
ccagcggatcacgaccccatccgtgagccaggctggtacttgagccgtaagctgcgtcag
cgtctgctggatgaacacgccgttcagggctggactgtggtgcagtttctgggggattca
gtcctgatccctgctggagctctgcaccaggtgcagaatcttcacagctgtgtccaggtg
atcaatgacttcgtctctccggagcatgtggtgcattcgttccacttaacccaggaactc
agatcctccaaagaggaaatcaactatgaagataagctacaggtcaagaacatcttttac
cactgcgtgaagaatgccgtggggacattaaagagctgctgcgcagaggaggaggaggaa
gaggagaccaactcatga
DBGET
integrated database retrieval system
