Rhinichthys klamathensis goyatoka (western speckled dace): 130081202
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Entry
130081202 CDS
T09701
Symbol
tnrc6c2
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130081202 (tnrc6c2)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130081202 (tnrc6c2)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130081202 (tnrc6c2)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130081202 (tnrc6c2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
130081202
NCBI-ProteinID:
XP_056102147
LinkDB
All DBs
Position
Unknown
AA seq
1794 aa
AA seq
DB search
MEEKKKKRQEVETKKNTAGKTVTEQKTKVPDSVKPNPSIPSSPILTLNLPVPSASTTSNG
KRNPSNALQQQLPPLQQSSPRYVHKEVPPRFRQQEQRQLLKRGQPLPTAALNPTSACTQT
GVISPPGTPTSKRHTGLPHQSVLGPQHENCHWNIPVTKSSSGNQDKVIINDTDTWPSITY
GKSQQTPECTLDAERTSEVISNSSSTIMATGASQQGHYPISKASVNLTSSMVSSQGGPNR
GWVSEGKVDLPMGSRGQSSWGASNLNLNPSANPAAWPALGHEGPGVGSGPSSIVYSNSLS
LSRCGQGGVAHPHSTIGNGSIGCVNGNLVGDCAWGNPDIPEQHQSPTNVSFNMKPPNLKT
DGPNNTKPEPMSPVNSWRGNLGQSPTEPASEDGTAFWGNRDAKNGESKDSGCDSASVSSW
GHGGASSGGGWGKQPSTDGTGWGKQPSTDGTGWDANDGPSQEHMSSWGPDTPASEGSRDS
SEGHPGRRERSSSDDLAPLLPRQDLDPRVLCNSGWGQTPVRQHTVWQMEQSPDKKNDAGG
EVWGSSSNTPLTGPAPSPPGCANPNHNGPPRMDTSKSEEPRRATPNTGWGGSAPASTQPN
GGWGEPPANKKVPNGSVCGWRDPIAEGLNTNGCNGQSWASEEKSPSWDDGTSQKKTQGWG
DGPKTSSGWGSSGSGNSGEWADSSEIRKSGSGSSSRDSENRNWKETQRGWGKSAPTQGGG
WGDSQHSNDSAQGWGGKLQESTCGNSGAGGIGSWCGPNSVKQSNSGWASGGHQDPGDEAT
GWDEPSPSSIRRKMEIDDGTSSWGDPSAYCKSVNMWDRNNSQNHTGTNKNGSSHSITGPN
NNNNSNHHQHHSQGPTQNHVNGNINNGSPSQGESPINRMPMGNPGWGELPNVQSNTEPST
WGEPANSNPSVDNGTSAWGQGQPTKSCGGWGESAYDSSGPYGRGNAPAGSGPCQEGPKPM
QDGWGSGGEETGMNTSQWDADDGDMWNSPTSQDSSCNSWGQSKKGPQRGKVSNQHDDVWI
MTRLIKQLTDMGFPKDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMCMSDYSNGMNRP
MVCRPTNLSKDPSLDRAPFLDKDGRLSDDASTSPFMPSPGLKHPLANSSLPSHGLGGVSS
GLSMQNLNNRQMQNGMFGTNGAAQTRVMQQQAPPPQPPVPPLSSAQPTLRAQVPQLLSPQ
VQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQVAYQRLQIQQQMMQAQRNVSG
PIKQQEQQVARTITNMQQQIQQHQRQLAQTLLMKQQQPPPSSHIGLHPNLGKASLDTFMG
HPQNSGLSVSDLQTKDQQSSPNSFSPYTLSGLTPNMNVNCMEGGGLSLKDPPQPQSRLSQ
WTHSNSIDSMTVSAQHMEANLNKHGPISAAQSHMPVGKSAMEDSFSPYNLMSRSESPTST
LVSPDSWTQGKSPNEKISSGSNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPNGPTI
NTNIQDVNRYLLRDRTGGKLLEMKSTWSPGPISHTQASLSHELWKVSPGTRNTSAPSRPP
PGLTNTRPESQNTRNSSTWGGNSLGLSQGWTSSYSSEGGTWSTDSPNRGSSWLVLRNLTP
QIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYNSKEETAKAQKSLHMCVLGNTTILAEF
AGEDDVNRFFAQGQSLTPTTSWQASKAPGSNQSRLGNTAASHPTGLWSGGGGGTKTVCST
GNSSSRNGGDMLWGGVPQYSSLWAPPNGDDARVIGSPIPINTLLPGDLLSGESM
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaggcaagaagtagagacaaagaagaacactgcaggaaaa
acggttactgaacagaaaaccaaagtgccagactccgttaaacccaatcccagcatccct
tcaagtcccattctgaccctgaacctgcctgtaccctctgcctccaccaccagcaatggc
aagcgtaaccctagtaatgccctacaacagcagttacctccattgcagcagtccagtccc
cgatatgtgcacaaagaggttcctccacgcttccgacagcaggagcagaggcagctattg
aagaggggtcaacctttacctacagccgctctgaacccgacctctgcttgcactcagacc
ggggtcatctcccctcctgggacgcctaccagcaaacggcacacgggacttccccatcaa
agtgtcctgggaccccagcatgagaattgtcattggaatatcccagttaccaaaagcagc
agcggcaaccaggataaagtgattattaacgacacagacacttggccttcaattacatac
ggcaagagccagcagacaccagaatgcaccttggacgctgaacgcacatcagaggtcatc
agcaacagtagtagcactattatggctacaggagctagccagcagggtcattacccaatc
agcaaagccagcgttaatctcacttctagtatggtctctagtcaaggtggccctaacagg
gggtgggtctcagaaggaaaggttgacttgcccatgggcagtagagggcagtccagctgg
ggtgcttctaatctgaacctcaaccccagtgccaaccctgctgcttggccagctcttgga
catgaggggcctggggtagggtcaggccctagtagcatagtttactcaaattcactttca
cttagtaggtgtggccaaggaggagtggcacaccctcacagcaccattggaaatggtagc
attggttgtgtcaatggaaaccttgtaggggactgtgcatggggcaacccggatatccca
gaacaacaccagtcacccacaaatgtatctttcaacatgaaacctcctaaccttaaaact
gatggaccaaataatactaaaccagagccaatgagtccagtgaacagctggagaggaaac
ctcggtcagtcacctactgagcctgccagcgaagatggaactgctttctggggcaacaga
gatgccaaaaatggagaatcaaaggactcaggctgtgattctgcaagcgtctcctcttgg
gggcatggaggagctagcagtggtggcggctggggcaaacagccaagcactgacggtaca
ggatggggcaaacagccaagcactgacggtacaggatgggatgctaatgatggtccatcc
caagaacatatgagttcctggggccctgatactccagcaagtgagggcagcagggatagt
agtgagggccacccaggaagaagagagaggtcctcaagtgatgatttggcccctttgctg
ccaaggcaggacttggacccacgtgtcctatgtaactcaggctggggacagactccagtt
cgtcaacacactgtttggcaaatggagcaaagtccagacaaaaagaatgatgcaggcggc
gaggtctgggggtcttcgtccaacacacctttaactggacctgcaccatctcctcctgga
tgtgccaatcccaaccacaatggacctcctagaatggacacaagcaagagcgaggaacct
cgcagagccacgccaaacacaggctggggaggatcagccccagcctctactcaacctaat
ggtggatggggcgaacctcctgcaaataaaaaggttcccaatggatccgtatgtggctgg
cgcgatcccattgccgagggtctcaacaccaatggctgtaatggccaatcttgggcttct
gaagaaaagtctcctagctgggatgatggtacttctcagaagaaaacacaaggttggggt
gatggacccaaaacatcctcaggctggggaagtagtggcagtggtaatagtggagagtgg
gctgactcttcagaaatacggaaaagtggctctggaagttcctctagggactctgaaaac
agaaactggaaggaaacccagagaggctggggtaaatcagcaccaacacagggtggtggt
tggggtgattctcaacattccaatgattcagcccaaggttggggtggaaaacttcaggaa
tccacatgtggcaacagtggagctggaggcataggatcatggtgtggcccaaattctgtg
aaacagagcaactctggctgggcatcaggaggccaccaggatccaggagatgaggccaca
ggctgggatgaaccatctccatcttctattcgtcgcaaaatggaaattgatgatgggacc
tcctcctggggtgaccccagtgcttactgcaagagtgtgaacatgtgggacagaaataac
tcccaaaatcatacaggaaccaacaagaatggcagcagtcatagcatcactgggccaaac
aacaacaataacagcaaccatcaccaacaccacagccaaggtcccactcagaaccatgtc
aatggcaacatcaacaatggctcacccagtcaaggtgaatctcctattaacaggatgccc
atgggaaatccaggttggggagagctccctaatgtccagtcaaatacagaaccctctaca
tggggcgagccagccaattccaacccttctgtggacaatggcacttcagcttggggtcaa
ggccaacccactaagagctgtggaggatggggtgaaagtgcttatgactccagtggacct
tatggcagaggaaatgcacctgctggatcaggcccctgtcaggaaggtcccaaacctatg
caagatggctggggatctggaggggaagagactggcatgaacaccagccagtgggatgct
gatgatggtgacatgtggaacagtcccacatcccaagactcctcttgcaactcatggggt
caatccaagaagggcccacaaaggggcaaggtttccaaccagcatgatgacgtttggatc
atgaccagacttatcaagcagcttacagacatgggttttccaaaggatcctgcagaagaa
gccctaaagagcaacaatatgaatctagatcaggccatgagcgctttgttggagaaaaaa
actgaactggacaaacgggggatgtgcatgtcagactacagtaatggaatgaataggccc
atggtgtgccgacccacaaacctctcaaaagacccctcactggatcgtgcccccttcctg
gacaaggatggcaggctgtcagatgatgcttcaacctcaccatttatgccttctcctggc
ctcaagcacccattggccaatagcagcctccctagccacggattgggtggcgtctcttct
ggcctgtccatgcaaaacttgaacaacagacagatgcagaatggaatgttcggcactaac
ggagcagcacaaactcgggtcatgcagcagcaggccccgccccctcagccaccagtgcca
cctcttagctccgcccagcctactctacgtgctcaagtgcctcagcttctctcccctcag
gttcaagcacagctcttacagtttgcggcaaaaaacattggactgaatcctgcactttta
acctcaccaataaatcctcaacaaatgaccctgctgtaccaactacaacaactgcaggtg
gcatatcagcgtttgcagattcagcagcaaatgatgcaggctcagcgtaatgtctctggt
cccatcaaacaacaagagcagcaagttgcacgtacaatcacaaacatgcagcagcagatc
cagcagcaccagcgtcagctggcccagactctgcttatgaaacagcagcagcctcctcct
tcctctcacatcggcctgcacccaaaccttggcaaggcaagcctggacaccttcatgggt
caccctcagaattcaggcctctccgtgtctgacctgcagaccaaagatcagcagtcttct
ccaaactccttcagcccttatacactctctggtttgaccccgaacatgaatgtaaactgt
atggaggggggaggtctatctctgaaagaccctcctcagcctcaatcccgactctcacaa
tggactcattcaaactccatagattccatgacggttagcgctcagcacatggaggcaaac
ctcaataaacatggtccaatctctgctgctcagtcccatatgcctgtcggaaagagcgcc
atggaagattctttcagcccatacaatctgatgtcaagatctgaatcccccaccagcacc
ttggtgtctcctgatagctggacacagggcaaaagtcccaatgagaaaatctctagtggc
tccaatatcaactggcctccagaattctgccctggagtgccatggaaaggtctgcagaac
attgaccctgagaatgaccccaacatgaccccaggaagtgttccaaatggccccaccatc
aacaccaacatacaagatgtgaatcgctacctgttacgtgacaggactggaggtaaactc
ttggaaatgaagtctacctggtcccctggacccatctcccacacacaggcgtctttatct
catgagttatggaaggtttccccagggacacgtaacaccagtgctccctctcgcccccct
ccaggccttacgaacaccaggcctgaatcccagaacaccagaaactcctccacctgggga
ggaaactcccttggcctcagccagggttggaccagctcttactcctcagaagggggaact
tggagcactgacagtcccaacagaggaagcagctggttggtgctcagaaacctcactcct
cagattgacggctccaccctacggactctgtgcatgcagcacggccctctcattaccttc
catctgaacctgacgcagggcaatgctgtcgttcgttacaactccaaggaggagaccgcc
aaagcccagaaatccctgcacatgtgtgtgctgggtaacactaccatcctggcagagttt
gccggtgaggacgatgtgaaccgcttctttgcacagggccagtcccttacccccaccact
agctggcaggccagcaaagcaccaggctccaatcaatcccggctgggcaacactgcagcc
agccaccccacaggcctctggagcgggggtggaggaggtaccaagacagtctgcagtacc
gggaacagtagcagcagaaacggtggcgacatgctttggggcggtgtgccgcagtactcc
agtttatgggctcccccaaacggagacgatgccagggtaatcggcagccccatcccaatt
aacaccttgctcccgggagacctgctgagtggagagagcatgtag
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integrated database retrieval system
