Rhinichthys klamathensis goyatoka (western speckled dace): 130081308
Help
Entry
130081308 CDS
T09701
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130081308 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
130081308 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130081308 (smx5)
03041 Spliceosome [BR:
rkg03041
]
130081308 (smx5)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130081308 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
130081308 (smx5)
Spliceosome [BR:
rkg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130081308 (smx5)
Complex C
U2 snRNP components
130081308 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
130081308
NCBI-ProteinID:
XP_056102312
LinkDB
All DBs
Position
Unknown
AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctactcgtttttcaagtccttggtcggcaaagatgttgtggtggagctcaag
aatgacttgagcatatgtggaacattacactcagttgatcagtatttgaacatcaaactg
acagatatcagtgtcactgatccagagaaatatccgcacatgttgtcggtgaagaactgc
tttatccgtggatcggtggtgcggtatgtacagcttcctgcggatgaagtggacacacag
ctactacaggatgctgcacgcaaagaagctatgcaacagaaacaataa
DBGET
integrated database retrieval system
