Rhinichthys klamathensis goyatoka (western speckled dace): 130082225
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Entry
130082225 CDS
T09701
Symbol
tfdp1b
Name
(RefSeq) transcription factor Dp-1b isoform X1
KO
K04683
transcription factor Dp-1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03083
Polycomb repressive complex
rkg04110
Cell cycle
rkg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130082225 (tfdp1b)
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130082225 (tfdp1b)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130082225 (tfdp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130082225 (tfdp1b)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130082225 (tfdp1b)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Helix-turn-helix
Fork head/winged helix cell cycle-controlling factors, DP
130082225 (tfdp1b)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
130082225 (tfdp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DP
E2F_TDP
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
130082225
NCBI-ProteinID:
XP_056102967
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MANDAGLKETNGEIKLFVNQTLSPGKPAGVLSFLTVHPASISAVKQILPKTLTGAHVLPH
VVMGTPQRTVLLPGPRSPHTHFHTPQTQNTLECSPWSAGSSSGRRGRKGDKSGKGLRHFS
MKVCEKVQKKVVTSYNEVADELVTEFSSGDTHISPNEAHVYDQKNIRRRVYDALNVLMAM
NIISKDKKEIKWIGFPTNSAQECEDLEVERQRRLERIKHKQSQLQELILQQIAFKNLVQR
NRQAERQSKSSPSPNTLIHLPFIIINTSKRTVIDCSISNDKFEYLFNFDSMFEIHDDVEV
LKRLGLAFGLESGRCNPEQLKIARTLVPKALQPYLTEMAQGAVNQLIGKLSHVATDRGPS
SSNGSRNETPSSHMEDEEDDDEEEDFDEDDDDDDD
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgatgctggactcaaagaaacgaatggagagataaagctgtttgtcaaccag
actctgagtccggggaagcctgcaggtgtgctgtcgttcctgactgttcatccggcgtcc
atctctgcggtgaaacagatcctgcctaaaacactcaccggcgctcatgtgctgccacat
gtggtgatgggaacccctcagaggacggtcctgttacccggcccgcgctcgccccacaca
cacttccacacgccacagacccagaacacactcgagtgctcgccctggtccgcggggagc
tcctccggcaggcgcggcaggaaaggtgataagagcgggaagggtttgaggcatttctcc
atgaaagtgtgtgagaaggtgcagaagaaagtggtgacgtcctacaacgaggtggcagac
gagctggtgacggagttcagctccggtgacacacacatctccccgaacgaggcgcacgtg
tacgaccagaagaacatccgcagacgggtttacgacgcgctcaacgtcctgatggccatg
aacatcatctccaaagacaagaaggagatcaagtggatcgggttccccactaactctgcg
caggagtgtgaggatctggaggtcgagcggcagcggcgactcgagagaatcaaacacaag
cagtctcagctgcaggagctcattctgcagcaaatcgcgtttaagaacctggtgcagcgc
aaccgtcaggcggagcgtcagagcaagagctctccgtctccaaacacactcatccacctg
cccttcatcatcatcaacaccagcaagaggaccgtcatcgactgcagcatctccaacgac
aagtttgagtacctttttaacttcgacagcatgtttgagatccacgatgacgtggaggtt
ctgaagcgcctgggtctggcgttcggcctggagtcgggtcgctgtaacccggagcagctg
aagatcgccagaaccctcgttcccaaagccctgcagccgtacctcacagagatggcgcag
ggtgccgttaaccagctgatcgggaagctttcccacgtggccacagaccgaggcccgtcc
agctcaaacgggtcccgaaacgagacgccatcatcacacatggaggatgaagaagatgat
gacgaggaagaagactttgatgaagatgatgatgatgatgatgattag
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