Rhinichthys klamathensis goyatoka (western speckled dace): 130082376
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Entry
130082376 CDS
T09701
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130082376 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130082376 (smarca5)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130082376 (smarca5)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
130082376 (smarca5)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
130082376 (smarca5)
RSF complex
130082376 (smarca5)
WICH complex
130082376 (smarca5)
B-WICH complex
130082376 (smarca5)
NORC complex
130082376 (smarca5)
BRF complex
130082376 (smarca5)
NuRF complex (fruit fly)
130082376 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
Myb_DNA-binding
HDA2-3
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
130082376
NCBI-ProteinID:
XP_056103203
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MSQTEISMEQQEPREEPSKLESVGPVEDDASENGPDEASDTAMDSEAQSSSPSSAKEKDQ
PGGYEEKVKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLL
SVGDNRHRRTEQEEDEELLSESNKTTSVCTRFDDSPSYVKNGKLRDYQVRGLNWLISLYE
NGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLR
AFCLIGDREERTAFVRDTLLPGEWDVCVTSYEMVIIERAVFKKFNWRYLVIDEAHRIKNE
KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLG
DTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKMYIGLSKMQREWYTKILMKDIDILN
SAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNGGKMVVLDKLLPKLK
EQGSRVLIFSQMTRVLDILEDYCMWRNYAYCRLDGQTPHEERQVSINAFNEPNSSKFLFM
LSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEER
IVERAEMKLRLDSIVIQQGRLVDPNMSKLGKDEMLSIIRHGATHVFASKESEITDEDIDA
ILERGEKKTMEMKEKLANLGESSLKNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRE
RKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIG
YKVPRNPDLPNSAQMQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWTKRDFNQFIKAN
EKWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISI
KKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCI
RNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRTSSAQKRK
QDGTPDGRGRRKKLKL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacagaaatcagcatggagcagcaggagccgcgggaagagccgagcaaactc
gagtcggtcggtccggtagaggatgatgcttcagaaaatggcccagatgaagcatcggat
acagcaatggatagtgaagcgcagtcttcatcaccttcctcagcaaaggaaaaggaccag
ccgggtggatatgaagaaaaagtgaaaacagaccggaccaacagattcgagtacctcctg
aagcagaccgaagtgtttgctcatttcatccaaccagctgcccagaagaccccaacttca
cctctgaagatgaagcctggtcgccctcgcatcaaaaaagacgagaagcagaacctgctc
tctgtgggagataaccgccaccgtcggactgagcaggaggaggacgaggagctgctaagc
gagagcaacaagaccaccagcgtttgcacacgttttgacgactcgccttcttatgtgaaa
aacggcaaactgagagactaccaagtccgtggactgaactggctgatttccctctacgag
aacggaatcaatggcatccttgctgatgaaatgggtcttggtaagactcttcagaccatc
tctctgctgggctacatgaagcactatagaaacattcctggacctcacatggttctggtg
cccaaatccaccctgtataactggatgaatgagttcaagcgctgggttccctctctgcga
gctttctgcctcatcggggacagggaagaaagaactgcgtttgtccgtgacacgctgctg
ccaggtgaatgggatgtgtgcgttacctcctacgagatggtcattatcgagagggccgtc
ttcaaaaagttcaactggagatacctggtcattgatgaggctcaccgtatcaagaatgag
aaatcgaagctttcagagattgtgcgagagttcaagaccacgaatcgattgctgctgact
ggaacccccctgcagaacaaccttcatgagctgtgggcgctgctgaacttcctgctgcca
gacgttttcaactcctcagaggattttgattcctggtttgacaccaataactgtctgggt
gacacaaaactggtggaacgtctacatactgtacttcgtccgttcctgctgaggcgtatc
aaagccgatgtggagaagtctctcctccccaaaaaggaaatcaaaatgtatattgggctc
agcaagatgcagagagaatggtacaccaagatcttgatgaaggatattgacattctgaac
tctgcgggtaagatggacaaaatgcgcctgttgaacgtgctgatgcagctcaggaaatgc
tgcaaccacccctacttgtttgatggagcggagccgggtccaccctacaccacggacctc
cacctggtggtcaacggcgggaagatggtggtgctggacaagcttctgcccaagctgaaa
gagcaaggttcccgtgtgctgatcttcagtcagatgaccagggtgctggacattctggag
gattattgtatgtggcgtaactatgcttactgtcgtctggacggacagactcctcacgag
gagcgacaggtttccatcaatgccttcaatgagcccaacagctcaaagtttctgttcatg
ttgagcaccagagcgggaggtctcgggatcaatctggccaccgctgatgtcgtcatcatc
tacgactctgactggaatcctcaagtggatcttcaggctatggatcgtgcccacaggatt
ggtcaaaagaaacaggtgcgcgtcttccgattcatcacggaaaacacagttgaggaaaga
atcgtggagcgtgcagaaatgaagcttcgcttggactccattgtcattcaacaaggcagg
ttggtcgatccaaacatgagcaaactgggcaaagatgagatgctgtccatcattcgacat
ggtgccactcacgtgttcgcttccaaggagagtgagatcacagatgaagacattgatgcc
atcttggaaagaggagagaagaagaccatggagatgaaggaaaagctggccaatcttgga
gaaagctcgctgaaaaacttcaccatggacaccgagaacagcgtgtacaactttgaggga
gaagattacagagaaaagaaaaaggtcatcactaactggattgagccacccaagagagag
cgcaaagcgaactatgccgtggatgcgtacttcagagaggccctgcgtgtcagcgagccc
aaagcaccaaaggctccccgtcctcccaaacagcccaatgttcaagacttccagttcttt
ccccctcggctgtttgagctgctggagaaggagatcctttactacaggaagactattggc
tacaaggtgccaagaaaccctgatctgcctaactcagcccaaatgcagaaagaggaacag
gccaagatcgatgaagctgaaccacttaatgaggaagagctggaggagaaggagaacctc
ctctcacagggttttactatttggaccaagcgtgactttaaccagttcatcaaggccaat
gagaagtggggaagagatgacatcgagaacatcgcccgggaggtcgagggcaaaacccca
gaggaggtcatggaatattctgctgtgttctgggagcgctgcaatgagctgcaggacatt
gagaagatcatggctcagatcgagagaggagaggccagaatccagaggagaatcagcatc
aagaaagcactggactctaaaattggccgttacaaggcgccgttccatcagctcaggatc
tcgtatggcacaaacaaagggaagaactacacagaggaggaggaccgatttctcatctgc
atgctgcacaaactgggcttcgacaaggagagcgtttatgatgagctgcgccagtgcatt
cgcaactcgccccagttccgctttgattggttcctcaagtcccgcacggccatggagctc
cagaggagatgtaacacactcatcacgcttattgaacgtgagaacatggagttggaggag
cgagagaaagcagagaagaagaaaagaggccctcgcacgtcttcggcccagaaacgcaag
caggacgggacccctgatggccgtggccgcaggaaaaagctcaagctgtga
DBGET
integrated database retrieval system
