Rhinichthys klamathensis goyatoka (western speckled dace): 130082379
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Entry
130082379 CDS
T09701
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130082379 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130082379 (patl1)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130082379 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
130082379 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130082379
NCBI-ProteinID:
XP_056103209
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEGLGEEEEEIDQFNDDTFGAGAIDDDWQEQHARLAELDELVRDD
LPGADGDLPPAGSNAKPSPLPPPSSSSRLYSDIDERAGGDLAESLTRLILGSDPAIAGVG
TASSDRSHLPPKLPGQTPHPSALAGLSPLQLSYQHHQHLLHRGPAPLSQINSHSIWENNM
GFGPVNSGLVSQKEDKTLMSIIKEVGLPNRPPKLREEGRDLSERVPPPRSSSPVIGSPPV
RAVPIGTPPKQPMSQILNQQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIANSPLSH
SPFPAGVGPVLSQIQRAQMLNSQFQRGPAPPLLQGGIGGFRPFFGQSGPRMGPHGPPLSH
APIRHNTTHLHPQHRRMLNQRMQNRGMGDHVGGRGVGDRKNRDPYSNLMTQREKEWVARI
QMMQLQSTDPYLDDYYYQNYYEKLEKRQERDRDNRKEHTTKLITPQVAKLEHTYRPVQFA
GSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDF
EKKFLQTPELQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKGKRLISRL
LPFLPQPQAAAVIMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQAMSSTSLTDLLQELQ
GREGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLKVPS
SALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITSLSR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcttttgacgatgactgcaccctggaggaggaggaagggttggga
gaggaagaagaggaaattgaccagttcaatgatgacactttcggtgcaggggccattgat
gatgactggcaggagcagcacgcccgcctcgcagagctcgacgagctggtgcgagatgat
ctgccgggagcagacggtgaccttcctcctgctggcagcaatgccaagccttcgcccctc
cctccaccttcctcttcctcccggctttactctgacatagatgaacgggctggcggtgac
ctggcggagtcattgactcgtctcatcttgggctcggatcctgctattgccggagtgggc
accgccagctcggacagatctcatcttcctccgaagctgcccggtcagactcctcatccc
tcagcattagctggactgtctcctctgcagttgagctaccaacatcaccagcatctcctg
cacagagggccggctcctctttcacagataaactctcacagtatttgggagaacaatatg
ggcttcggtcctgttaactctggattagtctctcaaaaagaggacaaaacacttatgtcc
attatcaaagaggtcgggcttccaaatcggcctcctaaactccgagaagaagggcgagat
ttgtccgaaagggttccgcctcctcggtcctcctcacctgtgattggaagtccacctgta
agagctgtgcctattggaacacctccaaaacagcccatgagtcaaatcctcaatcagcag
aataatcacccttcagccattcacgtgagagcctctgtgccactgcgttacccacctccc
ttccctgagcgtctgtcccccaacaacctcctcagcatcgctaactcgccgttgtctcat
tctccgttccctgctggtgttggtcccgttttgtctcagatacaaagagcccaaatgctc
aactctcagttccagcgtggtcctgctcctccattattacaggggggcattgggggtttc
aggccgttctttgggcagtctggtcctagaatgggtccccatgggcctcctctcagccac
gcacccatccgacacaacaccacccacctgcacccgcagcaccgcaggatgctcaaccag
aggatgcagaacagaggcatgggtgatcacgtcggcgggagaggggtcggagacaggaaa
aaccgagatccttacagcaatctaatgactcaaagagagaaggaatgggtagcgagaatc
caaatgatgcagcttcaaagcaccgatccgtatttggatgactactattaccagaattac
tatgagaaattggagaagcgtcaggagcgggacagagacaaccggaaggaacacaccacc
aaactcatcactcctcaggtggccaaactggagcacacctatcggccagtgcagtttgcc
ggatcgttaggaaaactcactgtctccagtgtgaacaatccaaggaaaatgattgatgcc
gtggtaaccactcgcagtgatgatgaggaaaaaagagagaagcaggtgtggaataaaaga
cgacaaatcctttacactgtggagaagatgtacagtctactgctagaagtgcaagacttt
gagaagaagttcttgcaaacccctgagctccaaagagatgccctgctagaacagcataaa
acccacacgctgcagctctacaactccctccgagaaaaagagtgggacgaccgagtgagt
gatgagcagtgcttgatgatcatgtcagtgcgtaaagggaaacgcctcatctccagactc
ctccccttcctgccacagcctcaggctgctgctgttatcatgggaatagccaggaacctt
ccagccctggccaagaaagacaaacaagaccaggtactgtgttggttggtggagccagtc
acagctgtaatccaggccatgtcgagtacttccctcactgacctccttcaggagctgcag
ggcagggaaggacagcttcccctcgtgctgcaaaataagttcggcgtgacgctgctgtat
ctgatcctgagtgaaggagagcggatgcagagctcggatcccaactgtcagctcatggat
gataaccgctggactgagttggtgttctctgtgacccgggagcttttgaaggtcccgtcc
tctgcgctctcatcacccctgttcactcctccaaacctagtgtcgctgttctctcgatac
gtggaccggcagagactcgagctcttgcaggagaagctacagatcacatccctgtccagg
tag
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