Rhinichthys klamathensis goyatoka (western speckled dace): 130082725
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Entry
130082725 CDS
T09701
Name
(RefSeq) uncharacterized protein LOC130082725
KO
K16669
protocadherin Fat 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130082725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130082725
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Cadherin related
130082725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_C_2
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
130082725
NCBI-ProteinID:
XP_056103554
LinkDB
All DBs
Position
Unknown
AA seq
2099 aa
AA seq
DB search
MRSIRVWKQAARWLFVFSLLWNTIVAQIRYTIPEELKEGSVVGNIAKDIGLDISDIANRK
LRIASDSNTQYFSVDTRNGELIVNGRIDREALCGQSASCLMPLQLVIENPLQLYRVNIEI
QDINDNAPNFHTNDDVLKIAESVAVGAKFPFESAEDLDVGSNSLKSYTLSNNAFFRLNVK
TLEDGKKVPELIIDKPLDREKQSVHKLILTALDGGDPAKSGTIMIQVIVQDINDNEPKFE
QSQYKASVQESTTFDSSVLTVKATDLDEGLNGEIQYFFGAHTPDHVRNIFSINVETGDIT
VIGKLDYELTKLYTFDVCAKDKGSPEQEGRSSVRLHIIDENDNMPEIILTSLPSPVSENA
SVGTVVALINVKDLDSGNNGKVNLTISSRFPFKLKPAFDNHYSLVTDSLLDREANAEYDI
ELEATDSGVPSLKSRKTLNVKILDVNDNPPVFSQSSYTVYIKENSPPGASLFSVSASDID
QDKNAILSYSILDLSSNPIPASSYFYINSENGTIYSMSSFDYEKTKLFSVIVQAKDHGSP
SLSRNATVHVFIMDHNDNAPAVIYPSTSMGSVPHQRMPRSAKAGHLVTKVTAVDADSGHN
AWLFYRLAEATDASLFSVNLHTGEVRTKRAVSEQDDSSQRLMIEIKDNGEPIQSTTVTVD
ILIEDGFHEPISDYREKTIEPNKKSGKITLYLIISLAAVSLLCLMTFFILLVKCARGSRG
GSSCCIRRTDSGYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFGSYLSPMSEFSDL
TLVKPSSTTNFTDTLNVLDASLPDSAWTFESQQVRRRIINYLIGAQIRYTIPEELKEGSI
VGNIAKDLGFDISDIAEHKGNPQLEGQSSVQIDIIDENDNPPEIILTSLPSPVPENATVG
TVVALITVKDLDSGVSLFSVSAFDIDQNKNAILAYSILDLSSSQVPALSYFYINSENGTI
YSMSSFDYEKIKLISIVVQAKDHGSPSLSSNATVHVFISDRNDNAPAVIYPSTSMGSVPH
QKMPRSAKTGHLVTKVTAVDADSGHNAWLFYRLAEATDASLFSVKLHTGEVRTKRAVSEQ
DDSSQRLMIEIKDNGEPIQSTTVTVDILIEDGFHEPISDYREKTVQPNKKSGKITLYLII
SLASVSLLCLMTFFILLVKCARGSRGGSSCCIRRTDSGYKNPNRNLQIQLNTDGPIKYVE
VLGGDMMSQSQSFGSYLSPMSEFSDLTLVKPSSTTNFTDTLNVLDASLPDSAWTFESQQR
FVDGNIKRNREMRHRRIRGWKWAALWLFAFSLLWNTVGAQIRYTIPEELKEGSIVGNIAK
DLGFDISDIAERKLRIASESNRQYVSVDSGKGDLVVNGRIDRETLCGQSASCLMPLQIVI
ENPLQMQRVEIDIQDINDNTPNFHTKDAILKISELTAPGARFTLESAEDLDVGSNSLKSY
SLSNNNFFRLNLKTLKNGRQIPELVLDKSLDREKQAAHKLILTALDGGNPVKSGTSLLQI
IVQDFNDNEPKFEVAAYKASVLESAVVGSSVIKIKATDLDEGPNGEIQYSFGAHTPELVR
NVFTVNAETGEITVIGKLDYETKKTYTFDVCAKDKGNPELEGQSSVQIDIIDENDNPPEI
ILTSLPSPVPENATVGTVVALITVKDLDSGNNGKIELIVSTDVPFKLKPSFDNYYSLITD
SFLDREVHSEYNVEILAIDSGVPPLKTVKTVNVKVIDVNDNPPIFSQSSFNVYVNENNLA
GVSLFSVSACDIDIDKNALLTYSVLDLSSNHVPASSFFYINSENGTIYSMSSFDYEKIKL
ISIVVQAKDHGSPSLSSNATVHLFILDRNDNAPAVIYPSTSMGSVPHQRMPRSAKAGHLV
TKVTAVDADSGHNAWLFYRLAEATDASLFSVNLHTGEVRTKRAVSEQDDSSQRLMIEIKD
NGEPIQSTTVTVDILIEDGFHEPISDYREKTIEPNKKTGKITLYLIISLASVSLLSLMTF
FILLVKCARGSRGGSSCCIRRTDSVYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSF
GSYLSPMSEFSDLTLVQPSSTTNFTDTLNVLDASLPDSAWTFESQQVRRGIINYLRITR
NT seq
6300 nt
NT seq
+upstream
nt +downstream
nt
atgagaagcatccgagtgtggaaacaggcagcgcgttggctgtttgttttctctctgtta
tggaatacaattgtagctcaaattcgctacactataccagaggaactaaaagaagggtcc
gttgttggaaacattgcaaaggacattggtctggacatttcagacatcgctaatcgtaag
ttacgaatagcctctgattctaatacgcaatattttagtgtggatacaaggaatggtgag
ctgatagtcaatggtagaatagaccgagaggcgctctgtggacaaagcgccagttgtctg
atgccgttacaactggttatagaaaatccattgcagttatatcgtgtgaatatagagata
caagatataaatgacaatgcaccgaattttcatacaaatgatgacgttttgaaaatagct
gaatcggtagctgtgggcgcaaaatttccatttgaaagtgccgaggatttagatgttggt
agcaatagtctcaaatcatatactttgagtaataacgctttttttcgtttaaatgtgaaa
acactggaagacggtaagaaagtaccagagttaataattgataaaccacttgaccgagag
aaacagtctgtacataagctcattttaacagcattagacggtggcgatcctgccaaatct
ggaactattatgatacaagtaatcgttcaagatattaatgacaatgagccaaaatttgaa
caatcgcaatataaagcatctgtgcaggagagtacgacatttgattcaagcgtcttaact
gtaaaagccactgacttagatgaaggtcttaacggcgaaatacagtattttttcggtgca
catacaccagatcacgtgagaaacattttcagtatcaatgttgaaaccggagatattaca
gtgattggaaaactagattacgagttaacaaaattatacacgtttgatgtctgcgctaaa
gacaaagggagcccagaacaggagggccgttcttcagtgaggctgcacatcattgatgag
aatgacaatatgcccgaaatcattttgacatctttacctagcccagtgtcagagaatgca
tcagtcggtacagttgtagctttaatcaacgtaaaagacttagattctggtaataacggg
aaagtaaatcttaccatctcctctcgttttccttttaaactaaaaccagcatttgacaat
cactattctttggtaactgactcactcttggaccgtgaagctaatgcagaatatgacata
gaattagaagcaaccgactctggtgtaccatctttaaaatctaggaaaactttaaatgta
aaaatacttgatgtgaatgacaaccctcccgtattctcacagtcttcgtacacagtgtat
ataaaggaaaatagcccaccaggtgcttcattgttttcagtatctgcgtctgatattgac
caagataagaacgcaatactgagttactcaattctagatttaagctcaaatccgattcca
gcatcatcttatttttatatcaactctgagaacggaactatttacagcatgagctcattt
gattatgagaaaacaaaattgttcagtgttatagttcaagcgaaagatcatggctctcca
tctctgagcagaaacgccactgttcatgttttcattatggaccataacgataacgctcct
gctgtcatttacccgtccacatccatggggtctgtccctcatcagaggatgccccgttct
gctaaagcaggacatctcgtcactaaggtaacagcagtggacgcggactcgggtcataac
gcctggctcttctacaggctcgcggaggccacggacgcgtcactgttcagtgtgaattta
cacacgggagaggtgaggactaaacgcgctgtttcagagcaagatgactcctctcagaga
ctgatgatagagataaaggataatggagaaccgatccagtccaccacagtaacagtggat
atactgatagaggacgggtttcatgaacccatctcagactatagagagaaaactatcgag
cccaacaagaaaagcggtaaaattactttatacctgatcatctctttagccgctgtgtcc
ttgttgtgtctgatgacgtttttcatcctactggtgaaatgtgcgcgaggcagtagaggc
ggctcaagctgctgtatcaggcgaactgattctggatacaagaaccccaacagaaacctg
cagatccagctcaacactgacggtcccattaagtatgtggaggttctgggaggagacatg
atgtctcagagtcagtcctttggctcctatctctctccaatgtcagaattcagtgatctc
actctcgttaagcccagcagcaccacaaactttacagacacgttaaacgtgcttgatgcg
tcattaccagacagcgcgtggacgttcgagagccaacaggtgagacgcagaataattaat
tacctcattggagctcagattcgctacacaatacctgaagagttaaaggaaggatctatc
gttgggaatatcgcaaaggatcttgggtttgacatctcagatatcgccgagcacaaaggg
aacccacagctcgagggacagtcatcggttcagatagatatcatagatgagaatgacaac
cctccagagattatattaacatctttaccgagccctgtgcctgaaaatgcaacggtggga
actgtggtggctctgattaccgtcaaagatttggactccggtgtttcattgttttctgta
tctgcgtttgatattgaccaaaataaaaacgctatactcgcttactcgattttggattta
agttcaagtcaagttccagcattatcttatttttatatcaattctgagaacggaactatt
tacagcatgagctcatttgattatgagaaaattaaactaatcagtatcgtagttcaagct
aaagatcatggctctccatctctgagcagcaacgccactgttcatgtgtttatttcggat
cggaacgataacgcaccagctgtcatttacccgtccacatccatggggtctgtccctcat
cagaagatgccccgttctgctaaaacaggacatctcgtcactaaggtaacagcagtggac
gcggactcgggtcataacgcctggctcttctacaggctcgcggaggccacggacgcgtca
ctgttcagtgtgaaattacacacgggagaggtgaggactaaacgcgctgtttcagagcag
gatgactcctctcagagactgatgatagagataaaggataatggagaaccgatccagtct
accacagtcacagtggatatactgatagaggacgggtttcatgaacccatctcagactat
agagagaaaacagtccagcccaacaagaaaagcggcaaaattacattatatctgatcatc
tctttggcttctgtgtccttgttgtgtctgatgacgtttttcatcctactggtgaaatgt
gcgcgaggcagtagaggcggctcaagctgctgtatcaggcgaactgattctggatacaag
aaccccaacagaaacctgcagatccagctcaacactgacgggcccattaagtatgtggag
gttctgggaggagacatgatgtctcagagtcagtcctttggctcctatctctctccaatg
tcagaattcagtgatctcaccctcgttaagcccagcagcaccacaaactttacagacacg
ctaaacgtgcttgatgcgtcattaccagacagcgcgtggacgttcgagagccaacagaga
tttgttgatgggaatatcaagcgcaacagagaaatgaggcacaggaggatcagagggtgg
aaatgggcagcgctttggctgttcgctttctctctattgtggaatacagttggagctcag
attcgctacacaatacctgaagagttaaaggaaggatctatcgttgggaatatcgcaaag
gatcttgggtttgacatctcagatatcgccgagcgtaagttacggatagcatctgaatca
aatagacagtatgtcagtgtggattcggggaagggtgatctggtagtaaatggcagaata
gacagagaaacgctctgtggacaaagcgccagttgtctaatgccactgcagatcgttatt
gagaatccattacagatgcaaagggtagagatagatatacaagacataaatgacaataca
ccaaactttcatactaaagatgccatattaaaaatatctgaactgactgctccaggcgct
cgatttacccttgaaagtgccgaggacctcgatgttggcagcaatagcctaaagtcctat
tcattaagcaataacaatttcttccgtttaaatttaaagacacttaaaaacggaaggcaa
ataccagagctagtgcttgataaatcactagatagagagaaacaggcagctcacaaacta
atattaacagctctagatggcggtaatccggtcaaatctggcacatctttactgcaaata
attgttcaagattttaatgacaacgaaccaaaatttgaagttgctgcatacaaagcatct
gttttagaaagcgccgttgttggttcaagtgtgatcaaaataaaagcaaccgatttggat
gaaggtcctaatggtgaaatacagtattcattcggtgcgcacacgcctgaacttgtaaga
aatgtgtttaccgtaaacgctgaaaccggtgaaataacagtcattggaaaactagattac
gagactaaaaaaacgtatacgtttgatgtctgtgctaaagacaaagggaatccagagctc
gagggacagtcatcggttcagatagatattatagatgagaatgacaaccctccagagatt
atattaacatctttaccgagccctgtgcctgaaaatgcaacggtgggaactgtggtggct
ctgattaccgtcaaagatttggactccggtaataatggaaaaattgagctaattgtttct
acggatgttccatttaaattgaaaccctcatttgacaactactattccttgataactgac
tcatttcttgaccgtgaggttcattcagagtataatgtagaaatactggccatagactct
ggtgtcccacccttaaaaactgtgaagacagtaaatgttaaagtaattgacgtgaatgac
aaccctccaatattttctcagtcctcgtttaacgtttacgtaaacgaaaataatctggca
ggtgtttcattgttttctgtgtctgcatgtgatattgacatagacaagaacgctctactc
acttattcagttttggatttaagttctaatcacgttccagcatcatcttttttctatatt
aattctgagaacggaactatttacagcatgagctcatttgattatgagaaaattaaacta
atcagtatcgtagttcaagctaaagatcatggctctccatctctgagcagcaacgccact
gttcatttgtttattctggaccggaacgataacgcaccagctgtcatttacccgtccaca
tccatggggtctgtccctcatcagaggatgccccgttctgctaaagcaggacatctcgtc
actaaggtaacagcagtggacgcggactcgggtcataacgcctggctcttctacaggctc
gcggaggccacggacgcgtcactgttcagtgtgaatttacacacgggagaggtgaggact
aaacgcgctgtttcagagcaggatgactcctctcagagactgatgatagagataaaggat
aatggagaaccgatccagtccaccacagtaacagtggatatactgatagaggacgggttt
catgaacccatctcagactatagagagaaaactatcgagcccaacaagaaaactggtaaa
ataacgttatatctgatcatctctttggcttctgtgtccttgttgagtctgatgacgttt
ttcatcctactggtgaaatgtgcgcgaggcagtagaggcggctcaagctgctgtatcagg
cgaactgattctgtatacaagaaccccaacagaaacctgcagatccagctcaacactgac
gggcccattaagtatgtggaggttctgggaggagacatgatgtctcagagtcagtccttt
ggctcctatctctctccaatgtcagaattcagtgatctcaccctcgttcagcccagcagc
accacaaactttacagacacgctaaacgtgcttgatgcgtcattaccagacagcgcgtgg
acgttcgagagccaacaggtgagacgcggaataattaattacctccgcatcactagataa
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integrated database retrieval system
