Rhinichthys klamathensis goyatoka (western speckled dace): 130082942
Help
Entry
130082942 CDS
T09701
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130082942 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rkg01009
]
130082942 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130082942 (pcdh1a)
Protein phosphatases and associated proteins [BR:
rkg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130082942 (pcdh1a)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130082942 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
130082942
NCBI-ProteinID:
XP_056103860
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MDLPVVLFLLWGLLLDLLSGAVGGILYRVHEEQPPSTLIGSLAADQGLPDTGHLYKLEVG
APYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE
VQDINDNTPQFPSPVLTLSVPENTHMGSLFSIPLATDKDTERNGVADYTLTAGPEAVALF
GLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNA
PTFEKSSYEAEVAENSPIGHSVLQVRANDSDMGPNGEIEYTLHQAIDPVPKLLRIDRSSG
IIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTH
SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYF
LQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAE
ENQPGEKVVDVVASDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKER
YEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQ
DMDEGENAQVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFMRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA
GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVVKVSDRGKPSRHAIALVHIYVNETIA
NVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR
LQREAKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKF
NLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPAAN
TFVGTGGDDNSTGSDQYSDYSYKTNPPKYSTKTLPHRRVTFSTANPVQDQHDSSQQSYYD
SGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNC
SQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGEEHRP
RLPPSRSAYSSSDHTPSDHAPLEEVPLRVTSEFPPTSPPSNHASKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatctccctgtggtgttgtttctgctgtggggactgttactggacttgctgagtggt
gcggtgggtggcattctataccgcgtccatgaggaacagcctccgagcacactgattggc
agtctggcagctgaccaggggctaccagacactggacacctgtacaaactggaggtgggc
gctccctatctgcgggtggatggcaaaactggagatatctttaccactgagatccctata
gacagagagacattgaaggattgtcgtaataaaggcaagccctgctttctggagtttgaa
gtgtccgtcacagaccttattcaaaatcagagtccacggctgatagagggaaggattgaa
gtgcaggatatcaatgataacacaccacaattcccctcacctgtccttaccctatcagtt
ccagagaacacccacatggggtcactcttttcaattccactggccactgacaaagataca
gagaggaatggagtagctgactacaccttaacggcaggaccagaggctgtagcactcttt
ggtctgcaagttgcagaggaccgaggtgaaaaattgcctcaactcattgtgttgggaagt
cttgatcgagagctaaaagactcctatgacctcaccatcaaagctgtggatggaggcaat
ccacctcgctacagcagtgccttgctgagggttgtcattgctgatgccaacgacaatgca
cccacatttgaaaaatcctcctacgaagcagaggttgcagagaacagcccaatcggacac
tccgtgttacaggtgagggctaatgattcagacatgggtcctaatggcgagattgaatac
acattacatcaggcaattgatcctgtgccaaaactgctccggatagaccgctcatcaggc
atcatatatgtcaaaggcccgttggatcgtgaggagatcaacaatttgaaattttacgtc
gttgcacgagacaaaggtccctcacccaaaagttctaaaacgtatgtttctattgatgtg
acggaccagaatgacaatgcaccagcagtggagattcgaggcattggtcttgtgacccat
agtgatggagtagcaaacatttcagaggatatgccagttggtacagcagtggcattggta
caggtttcagacaaggacgagggagagaatgccgtggtgacctgtgtggttgcaggtgat
gttcctttccagcttcggccagccagtgattcatcagttgacaacaagaggaagtacttt
ctgcagaccacaacacccctggactatgaaagagttagggactaccgggtggagatagtg
gcagtggattcaggcaatccagctctgtccagcactaactcgctgaaagtccaagtcact
gacacaaatgacaattcccccattttctcaccaaccctgtttgaagttgagtttgctgag
gagaaccaaccaggagaaaaggtggtagatgtagttgcctcagatgcagacagtggcact
aatgcagagcttgtctacagcattattgcggactcttcaacaagggggctttttgagatt
gaccccagctcaggcgaagtacgtgctcgaagccctctcgatcgcgagcacaaggagcgc
tatgagttccgtgttactgcagctgataaaggggttccgagtcacaggggtactgccaca
gttgtaatcaaagtacttgatcggaatgacaacgatcctaagttcatgctgagtggctac
agcttctcagtcttggagaacatgccacctcttagccctgttggtatggtaacagtacag
gacatggacgagggagagaatgctcaagtgcaactttctgtggaacctgatgtgggcaaa
tttgtgatccagaatggtactggcactattctgtccagtatttcatttgacagagagaaa
gagagcagttacacattccggttgaaagctgtagatggaggggatccacccaggtcctcc
tacgttggagtgaccatcaatgttctcgatgagaatgataatgcaccggttgtcactaaa
ccatctaactcatcctttatgcgtctttctcccatggctgctccagacagtgttgtagaa
gtggtggaagcagaggacattgattctggttccaatgctgagctagtatacagcattgct
gggggaaatccacatgaccttttttacatctctccatctaatggcgagatcacactaaca
aaggaactaactcgaaaacatagtggtctgcatcgactggtggtaaaagtgagtgacaga
ggcaaaccatcccgccatgccattgccttggtacacatttacgtaaatgaaaccattgct
aatgtaagtcatgtggaggcacttgtggggcatagcttgtacaccccactggacatggac
attgcaggtgacccagattatggtttggctgcccagagaagcaacatagtatatggcagt
ttagcaggagtggcgggagttgtcactgtgattgttgtggtggtcttcatcaggcatcgc
cttcaaagagaagcaaagagtggttatcaggctggtaagaaggagaccaaagatttgtat
gcccccaagcaagggccaaaaagtggcaaggggagaaagggtaaaaaaggtaagccacca
aagtcacctaaacctcttggagaggatgaggaagtcagccttcaaaagagtctgaaattt
aaccttgatggggtcaacgacagccccaggatccatttgcctctgacatatccgcctgga
agccctgacctaggcaggcactaccgttccaattccccattgccctccatccagctccag
gcccagtccccatctgcctcccaaaagcatcaggctgtccaggagctccctgctgccaac
acctttgtgggaacaggtggtgatgacaactccaccggctcagaccagtactcggattac
agctacaagaccaatccaccaaaatacagcacaaaaacgctcccgcatcgcagagtgacg
ttctccacagccaatcccgtgcaagatcagcacgactcctctcagcaaagttactatgac
agtggcttggaggagtccgagacccccagcagcaagagttcttcaggaccccgtatcggc
cccctcgccctgcctgaggaccactacgaacggaccacccctgatggcagcatcggagag
atggagcacccagaaactgatattcgctcattgcctgacgttgccatgacgggaaactgc
agccaggagtgcagcgagcttggtcactcagatgcctgttggatgcccggtcagccttcg
cccgtccgcaagacacgcaacccccctaaactgtccacgtttgtgccttatcaggagagg
gggagcctgggacgcctggccaatgggagcgtgaggttgggaggagaggagcacaggcca
cgcctcccaccttcccgtagtgcctactccagtagtgaccacacccccagtgaccacgcc
ccactagaggaggtgcctctgagggtgacatcagagttcccgcctaccagccccccctcc
aatcacgcttcgaaaagagagatatacctgtga
DBGET
integrated database retrieval system
