Rhinichthys klamathensis goyatoka (western speckled dace): 130083162
Help
Entry
130083162 CDS
T09701
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130083162 (col13a1)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130083162 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130083162
NCBI-ProteinID:
XP_056104166
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MEDMKLRVSPQSSQERTCVQHPSQKRILTNWKDVCAICVCLISFGVCVLLYLRTSDLQSR
VLSLEKDRDPRIFSWISLEQVEPVLWSRLDQILEEKLAARLPKIRAARDAPHGCLCPPGM
PGPPGRAGFPGDKGSMGIPGRMGLKGNLGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGQNGPKGDMGPRGPKGVPGEPGPKGEKGVCGDYTHRQMLPITVRNMPSISP
LILKRLKQGEPGAQGPPGPPGPPGPSGTPGLNGASGPPGKPGEPGKPGKDPRMLPGLKGE
PGVPGHKGDRGEGGPSGPEGPKGIKGDEGLKGEKGDANAAGTGIKGEPGTPGQAGPKGEK
GDQGIKGETGQEGPSGPRGPPGPTGEPGKTLINNNENDIRNVHSVGAPGLPGPPGLPGTP
GLKGDVGLPGPPGLDGEKGPRGKPGEQGPIGPPGLEGPRGEGGVMGFPGPKGDKGVMGPS
GSPGLDGPTGEKGVSGPPGHIGLPGPMGQKGELGEKGDKAELVYGPAGPPGPAGPVGPMG
TPGLSGPKGEPGIGLRGEKGSPGQKGDKGDRGHLGLPGAHGLDGSPGPVGLIGPAGVSGP
AGPKGEMGEKGDMGVAGPIGPQGIPGLVGPPGLKGNRGERGKKGNRGAKGDKGDQGAPGL
DAPCPLGDDGLPVPGCWNKGQNPFQLAKK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatgaaattgcgtgtatcacctcagtccagtcaggagaggacctgcgttcag
catcccagccaaaagcgcattttgacgaactggaaggacgtgtgtgctatctgcgtgtgt
ttgatctcgtttggagtttgtgtgttgctttacctgaggacgtcggatctgcagtccagg
gtgctcagtttggaaaaggaccgagatccccgtatcttcagttggatctctctggaacag
gtggagcccgtcctgtggagtcgactggatcaaatattagaggagaaactagctgcacgt
ctaccgaagatccgggcggctcgggatgcacctcacggctgcctctgtccaccaggtatg
cctggtccacctggacgagcaggctttccgggagacaaaggatcaatgggcattcctgga
agaatgggcttaaagggaaacctgggggagaagggagcgccaggagagccaggtctgtct
atcattggcccacgaggacctcctggacagcccggtactagaggatttccaggctttccg
ggccccatcggcttggacgggaaacctggacagaatggtccaaaaggtgatatgggtcct
cgtggtcctaaaggagtaccaggtgaacctggtccaaaaggagagaagggtgtatgtggt
gactacactcacaggcagatgttacccatcaccgtccgcaacatgccctcaataagccct
ctaatcctaaagcgcctcaagcagggcgagcctggagcacaaggaccaccgggacctcct
ggccccccagggccttcggggactcctggtctaaatggtgcaagtgggcccccgggtaaa
cccggagaacctggaaaacctggaaaagacccaaggatgctaccggggctgaagggtgaa
cccggtgtacctggacataagggtgatcgtggtgaaggaggtccaagtggacctgaaggc
cccaagggaattaaaggagacgaaggactgaagggagaaaaaggcgatgctaatgctgca
ggaactggcattaaaggagaaccaggtaccccaggacaagctggacccaagggtgagaaa
ggtgatcaaggcataaagggtgaaactggccaggaaggcccatctggaccaaggggacca
cctggtccgaccggggagccaggaaaaactttaatcaacaacaatgaaaatgatattcgc
aatgtgcattcagtgggcgctcctggtctacctgggcctccagggcttcctgggaccccc
ggtttgaagggtgacgttggacttccaggcccccctggtcttgatggggaaaagggtcca
agaggaaagccaggagaacagggacccatcggccctcctggactagagggaccacgggga
gaaggaggagtcatgggcttccctggcccaaaaggagacaagggagtcatgggcccctcg
ggatcacctggtttagatggccctactggagaaaagggggtttcagggccccctggccat
attggattgccaggcccaatgggtcagaaaggtgaacttggagagaaaggagataaagca
gagctggtctatgggcctgctgggcctccaggacctgcagggccagttgggccaatggga
actccaggtttgtcaggaccaaagggagagccaggaataggcttgagaggagagaaggga
tcacctggacagaaaggagataaaggagacaggggccatctgggactccctggggctcat
ggtttagacggcagtcctggtccagtgggtctgataggaccagcaggagtgtctgggcct
gcaggaccaaaaggagaaatgggggaaaagggcgatatgggagtagcaggaccaattggg
cctcaaggcatcccaggtttagtaggaccaccgggattaaaaggaaatcggggggagagg
ggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagccccaggatta
gatgccccgtgtccgttgggcgatgatggtctgccagtaccagggtgttggaataaaggt
cagaatccgttccagctagccaagaagtaa
DBGET
integrated database retrieval system
