Rhinichthys klamathensis goyatoka (western speckled dace): 130084130
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Entry
130084130 CDS
T09701
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130084130 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rkg01009
]
130084130 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130084130 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
rkg03029
]
130084130 (rb1cc1)
Protein phosphatases and associated proteins [BR:
rkg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130084130 (rb1cc1)
Membrane trafficking [BR:
rkg04131
]
Autophagy
Autophagosome formation proteins
ULK complex
130084130 (rb1cc1)
Mitochondrial biogenesis [BR:
rkg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
130084130 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF6950
Motif
Other DBs
NCBI-GeneID:
130084130
NCBI-ProteinID:
XP_056105281
LinkDB
All DBs
Position
Unknown
AA seq
1620 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAIQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLLKFDTAYTNYQQ
DFEDIKIKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSCSPHPRTTDDEDDEAGETST
QSAILRPADGQKNRKTPSPVSASGETSSQASSSPQDRLKSSCSLKAALQEEEESLERGAM
PFFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTECRETITKLDNQNMKA
IKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLE
RVRVVEALSTVPQMYCLAVAEVVRRKMFIGHYRQWANALVRDGKNLYEAEKVKRETFGKL
FRKSFLRNRLFRGLDSWPPSSFCTRRPRKFDFELPDISLNDLQYLKSCCPSEVQPYLRVP
TLCDFEPLNHHVEVLHQLVQAAQSVDEMSQTITDLLNEQKISCSQSAQRSTALTPRSEST
TAVISTSTKTLSTLILKAPDCQPMVLPGPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQG
SLDLDSLAESPESDFMSAVNEFVIEENLMSPNPISDPTSPEMMVESLYSSVINAIDSKRI
QDTTTLEKENLKITALKLSADRYRSAAEESKNNLRKVKEDLYHFRGLVLKEQRDFGFALK
TMTIEVRNALNSVRYCHEEKLRETQQSNLQSLKDDHEKQILTLTEELEGNRKIVRDVQRA
MLDLEGLVERKEKEISQLESEKGRYMQDRQDLHKQTVQDLEEKILKQSEELKATLLSKDE
LARQLENLHFEIEDGQQKIRLEMENAEKVHLQELETRLNQQHESMLQSFRLEKETALEKL
VQENLVKLRDLMDSHSAELKEREGRSKDLEARITELADARCKLEVEMALKEAEMEDMRLQ
YEEAKSTQEEVLKSELTTQTTTLQMQIDKLNQQLQQKNEEYEVGLAELRALMRLEKDHCI
SELVDRHEEESTLFRHKFSALKQKSQDAEKDCEERVQKIRHDHQDQLAALQREKQDEQRA
FQEKEQDLQTVIGDLQAENSLLSGRLEQERVEALHRAEKEKEEAVKAALQEALRDFQLQK
EETETRLLGAIDLLESQLKDRQSTDIVAASVEQSEAGVEAGAALSLDSGQWTEERASLLA
QLEILERIKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDITEKLKNVLQQQEKD
KGLIETLSEDRATILQEKKQMEEELNRLRSTVLVSSSFFPPNPIPVVAEAHGACGPAHTE
VLSPSTPDPERLALMAAFKDEERVESAVEASMMTVHDNSMLSEEKQRILMLERTLHMKEE
ENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLH
SESLTALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgtttcaagtcaacaatggaagcacattaacgtttgacaccgaactt
gctgtccaaactgttttggaccttaaacatgccattcaggccaaatataaaattgcaatc
cagcaccaggtgctggtggtcaatggaggggagtgtatggtggcagagaggcgtgtgtgc
agctacagcgccggaacggacaccaacccgatcttcttgttcaacaaagagatgatcctg
tgtgaccgagcgccaaccatccccaaaacaaccttctccatagagaatgagatggagctg
aaggtggaggagtccctcatgatgcctgccgtctttcacactgtcgcctcccgcactcaa
ctggctgtggaaatgtttgaggttgccaagaagctttgctcattctgtgagcgtctggtc
catgatgaacaccttcagcaccagggatgggcggccatcatggctaacctggacgactgc
accctgtcctatcaaaaactcctcttgaaattcgacactgcttacacaaattaccaacag
gattttgaagacatcaaaataaaactcaccaagcttggcactgctgtctcggtcatggca
aagattccactgctagagtgtttgactcggcacagctacagagaaagcttggagaagtcc
tgctcccctcacccaagaaccacagatgatgaggatgatgaagcaggagaaacatccacc
cagtccgctatcctccgtcccgctgacggccagaagaatcgaaagacaccatcgccggtc
tctgcttcaggagaaacatcatcccaggcgtcctcctctcctcaggacagactgaagagc
agctgtagtctaaaagcagctctacaggaagaggaggagtctctggagaggggagcaatg
cccttttttaatgtcacactgttagattggatcaacgttcaggacagacccaatgatgtg
gagtcggtagtgaggaagtgttttgactcgatcaacaggctcgatccacgaattatccaa
ccctttctaactgaatgccgtgagacgattaccaaattggataatcagaacatgaaggcc
atcaaaggtcttgaggacagattgtatgcgcttgaccaaatgatagcaagctgtaaaaag
ttggttaatgaacagaaggaacttgctcagggatttcttgccaatcagaagagggctgaa
aacctgaaggacacctcggtgctgcctgacctgtgtctgagtcacgccaaccagctgatg
atcatgctgaccaatcacaggaagctacttgacatcaagcagaagtgtaccactgccaaa
caggagctcgccaacaaccttcaagttcgtctcaaatggtgctgctacgtgatgcttcac
gctgatcaggatggagagaagctgcaggctctcctgagactgctgacagagctgctggag
cgcgtacgggtggtggaagcgctcagcactgtgccacagatgtactgtcttgccgtagcg
gaggtggtcagacgcaaaatgttcataggacactacagacaatgggccaatgctcttgtc
agagatgggaaaaacctctatgaggcagaaaaagtaaaaagggaaacctttgggaagctc
ttcaggaaatcgttcctcagaaatcggttgtttcgaggactggactcatggccaccctct
tcgttttgcactcgaaggcctcgaaagtttgattttgagcttccagatatttccctgaat
gacctgcagtatctcaagtcctgttgtccttccgaagttcagccttacctcagggtcccc
acattgtgtgactttgagcctcttaaccatcatgttgaggttctccatcagctggttcag
gctgcacagagtgtggatgagatgtcacaaactatcacagacctactaaatgaacaaaag
atttcctgtagccagagtgctcaaagatccactgcattaacacccagatctgaaagcaca
actgctgtcatctctacctccaccaaaactttgtccactctcattttaaaagcaccggac
tgccaacccatggtgcttcctggtcccctggaggacctatcacccgacagcatagatgcc
cagacctttgactttgaaaccattgggcaccccaatatggatcctgtattacagcaaggg
tcgttggacttggactcattggcagaaagtccagagtcagacttcatgtcagctgttaat
gaatttgttattgaggagaacttgatgtcacctaatcccatcagtgatcctacaagccca
gagatgatggtggagtctctttactcctctgttattaatgcaatcgatagcaagcgtatc
caggacactactacccttgagaaggaaaatttaaagatcacagctcttaagctatcagca
gacaggtaccgttccgctgcagaagaatccaagaacaatttgaggaaagttaaagaagac
ctttaccactttcgaggtcttgttctgaaggagcaacgagactttggattcgccctgaaa
actatgaccattgaggtccgaaacgcactcaacagtgtcagatactgtcacgaggagaaa
ctaagagaaacgcaacaatccaatcttcagagtttgaaggacgatcatgaaaagcagata
cttactctcacggaagagctagaaggcaatcggaagattgtcagagatgtccagagagca
atgctggacttggagggtcttgtggagcgcaaggagaaggaaatatcacagctggagagt
gagaaggggcgttatatgcaagaccggcaagatcttcacaagcaaactgtgcaggacctt
gaggagaagatcttgaagcaaagtgaagaactgaaagctacactgctgtccaaggacgaa
cttgccaggcaattggagaacctgcactttgagatcgaggatggccaacagaaaatcaga
ctggagatggagaatgcagagaaagtgcaccttcaagaactggagacacggttgaaccaa
caacatgaatcaatgctgcaatctttcagactggaaaaagaaactgcgcttgaaaaactt
gtccaggagaacctggtgaaactaagagatctgatggattcccattctgccgaactcaag
gagcgcgagggacgctcaaaagacttggaggctcgtattacagaacttgcagatgcccgc
tgcaaactggaagtcgagatggctcttaaggaggccgaaatggaggacatgagactccag
tacgaggaggccaaaagcactcaagaagaggttttgaaatcggagcttactacccaaaca
accaccttgcagatgcagatcgacaagttaaaccagcagctccagcagaagaacgaagag
tacgaggtgggcctggctgagctccgagcgctcatgaggttggagaaggaccactgcatc
tctgaactcgttgatcggcacgaagaggagagcaccctgttccgccataagttttcagcg
ctcaagcagaagtcgcaggatgcggagaaagactgcgaggaacgagtccagaagatccgg
catgatcatcaggaccagcttgctgccttacagagggaaaagcaggatgagcagagggct
ttccaagagaaagagcaagacctacagactgttattggagacctgcaggcggaaaactca
ctattgtcaggaagactggagcaggagagggtggaggccctgcatagggcagagaaggag
aaagaggaggcagtcaaagctgcattacaagaggccttaagagactttcaactccaaaaa
gaagagactgagacaagactgttaggagcaattgatctacttgaaagtcagctaaaagac
agacaatccactgacatagtggcagcttctgtagagcagtctgaggctggtgtggaggcc
ggcgccgcattgtcactagacagtggccagtggaccgaggagagggcatcgctcttggcc
caactagagatcctggaacgcataaagaatgaggagatgcagaatctgaagacctcactc
attgctgaacagcagacgaacttcaatacagttctgactcgggagaaactcaagaaagaa
caaatcatcaatgatatcacagagaagctcaaaaacgtgttgcagcaacaagagaaagat
aaaggcctgatcgaaacactctccgaggaccgcgccaccatccttcaagagaagaaacag
atggaggaggaactcaaccgtctgcgaagcaccgtcctcgtctcttcatccttctttccg
cccaatcccatccctgtcgttgcggaggctcacggtgcctgtggtcccgcccacacagaa
gttctgtcgccgtccacccctgacccagagagattggcgctcatggctgcattcaaggat
gaggagagggtggagtcggccgtggaggccagcatgatgacagtgcatgacaactccatg
ctatctgaagagaaacagcgcatactgatgttggaaaggaccttacatatgaaggaggaa
gagaacaagagacttagtcaaagattgatgtcacagagtatgtcgtccgtgtcgtcacgg
cactcggagaaaatcgccattcgagattttcaggtgggcgacttggttctcataatcctg
gacgagaggcacgataattacgttctcttcactgttggtcccaccctttatttcctgcac
tcagagtccctcactgcactggacctcaaaccagcgacaggagcaacaagacggccgtgg
gttttaggaaaagtcatggagaaggaatattgccaagctaaaaaggcccaaaaccggttc
aaagttcctctcggcaccaaattctacagagtaaaggccgtgccatggaacaagaaagtg
taa
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integrated database retrieval system
