Rhinichthys klamathensis goyatoka (western speckled dace): 130084200
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Entry
130084200 CDS
T09701
Symbol
sdc3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04514
Cell adhesion molecule (CAM) interaction
rkg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
130084200 (sdc3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130084200 (sdc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rkg00535
]
130084200 (sdc3)
Proteoglycans [BR:
rkg00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
130084200 (sdc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
BPD_transp_2
SDH8
Motif
Other DBs
NCBI-GeneID:
130084200
NCBI-ProteinID:
XP_056105407
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MHTGCISLLQQISQGFGKEIRTECLQHVSLSVVQVGEEIALDLIAFAEWPVAQRRLSDVE
SSGDGDELYDDEDFSSGSGSGFPDMDVRPSAASVAFTTKEPLPLSTTQATGPAPSAPPAA
EPSRPPAPELERESGLGQDVDTDSKPEMENEKKWEIEEEDRDQESVTEIRLDQERPKATV
APRLTDVPEVFVDSTTTLGETTVAPSDLEEEDDLYITTETMMFEPSTPETTTDDITTIEV
MPTTVSSTTVKSTRARPAPTTPSPAPVRPRQPQTTPSPAPVRPRQPQTTPSRAAPTESST
RSLMSSSTQTQTTDETVNNEVAGPGPSGDFEIRETEAGQGNELGRGRGAGEPDLSGNTVD
AAGSSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPK
QATVTYQKPDKQEEFYA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccggctgcatctcgcttctccagcagatttcgcaaggatttgggaaggagatc
cggacggagtgtctccagcatgtatctctgagtgttgtacaggttggagaggaaatcgca
ttagacttgattgcatttgctgaatggcctgtggcccagcgtcgactgagcgacgtggag
agttctggagatggagatgagttatatgatgatgaagacttctcctctggatccggctct
ggctttccagatatggatgttcgtccgagtgcagcaagtgtggctttcactacaaaggag
cccctcccactttccaccacacaggccacaggccccgccccctcggcccccccggccgcc
gagcccagccgcccacctgcacctgagctggagcgagagagcggcctgggacaagatgta
gacacagacagcaaaccggaaatggagaacgagaaaaagtgggagattgaggaggaggat
agagatcaggaatccgtgacggaaataaggttggaccaagagaggccgaaggctacggtt
gcaccgcggttgactgatgttcctgaagtgttcgtggactcaaccaccactctgggtgag
actacagtggcccctagtgacctggaggaagaggacgatctgtacattactacagaaacc
atgatgtttgagccatccacaccagagaccaccactgatgacatcacaaccattgaggtc
atgcccaccaccgtttcgtccaccactgttaaatcgaccagagcccgccctgctccgacc
acgccaagccccgcccccgtacgaccccggcaaccacagaccacgccaagccccgccccc
gtacgaccccggcaaccacagactaccccgagtagagccgccccgactgagagcagcact
cgctcgctcatgagctccagcacacagacacaaacaacagatgaaactgtaaataatgaa
gttgcaggaccaggtccaagtggtgactttgagatccgcgagactgaagctggccaaggc
aacgagctcggtcgaggaagaggagcaggagaaccggatctgagcgggaacacagtagat
gctgccggaagctcggctgctcaacttccacagaagaacatcctcgagaggaaggaggtc
ttgatagcggtgatcgtcggaggtgtagtcggagcgctcttcgctgcgttcctcgtaatg
ttactcgtctaccggatgaaaaagaaagatgaaggcagctacacattggaggagcctaaa
caagccaccgtcacctaccagaaaccggacaagcaggaggaattctacgcctaa
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