Rhinichthys klamathensis goyatoka (western speckled dace): 130084449
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Entry
130084449 CDS
T09701
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130084449 (trpc1)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130084449 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
130084449
NCBI-ProteinID:
XP_056105884
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MHISALPYSLSVIMAALYQGTDVSSPDKYLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEEKRHGELNINCVDVLGRDAVTISIENENLDILQLLLDHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKIIQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELST
DLKELSLVEVEFRNDYEELAQQCKMFAKDLLAQARNSRELEVILNHTSSEDQVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKILYVLSVALLWP
LLSVCYLLGPRSRVGQVIHTPFIKFIIHSASYFTFLLLLNLYSLVYNEDTKNSMGPPLEF
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALRVVAYSKCKN
EDVDRKDWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKFL
GLFLLVLISFTIGLTQLYGKDQKDPSRTKDQNCEGIFCQQQSNDTFHTFMGTCYALFWYI
FSLAHVALFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKSFRQIANHEDK
EWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLVISLSKWICSHTSTGKVKRQNSLK
EWKNLKHKRDQNYQKIICCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRDL
LGFRTSKYAMFYPRS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgctttgccgtactctctctccgttataatggctgctctatatcagggc
acggacgtgtcctcaccggataaatatctggcgttaaaagacgtcagagaggtgaaggag
gagaccactctggacgagaagctctttctgctggcctgcgagaagggagactactacatg
gtgaagaaacttctggaggagaaacgacatggtgaattaaacattaactgtgtagatgta
cttgggagagatgctgtcaccatttcaatcgaaaatgagaatctagacatattgcagttg
ctcttggaccatggctgtcaggccacagatgcattattagtggctattgattccgaagtg
gtaggagcagttgacatcctgctaaaccatcggcccaggcgttcctccaagccttctatt
gcgaaaataattcagcgcattcaaaatccagagtattccaccaccatggatgttgctcca
gtcattcttgcggcccacaggaacaattatgagattttgaccatgctattaaagcaagac
atctcactgccccgaccccacgctgtaggctgcgagtgcaccctctgtaatgccaaaaac
aagaaggacagtcttcgccactcaaggttccgtctagatatctaccggtgccttgccagc
ccatcgttgatcatgcttacagaagaagaccccattctgagagcatttgagctcagcact
gatctgaaagagctgagcctggtggaagtggagtttcggaatgattatgaagaacttgcc
cagcagtgcaagatgtttgccaaggacctgctggctcaggcccgcaactctcgcgaactg
gaagtcatactgaaccacacatccagtgaagaccaagtggacaagagaggcctgctggag
gaacgcatgaacctcagtcgcctcaaactggccatcaaatacaaccaaaaagagtttgtc
gcccagtccaattgtcagcagttcctgaacacggtgtggtttggcgagatggcgagctac
cgccgcaagcacacgggcttaaagatcctgtatgttttgagtgttgctctgctgtggccg
ctgctgtccgtctgctacctgctgggacctcgttctcgtgtgggccaggtcatccacaca
cctttcatcaagttcatcattcacagtgcatcttacttcactttcctactgcttctaaac
ctgtattcactggtctacaatgaggatacgaagaactcaatgggtccccctttggagttt
atagactaccttctcattctctggatcataggcatggtgtggtcggatgtgaagcgtcta
tggtatgagggattggaagatttcctggaagagtcacgaaaccagcttagtttcgtcatg
aactcactttatttggccacctttgccctgagagtggtggcttacagcaagtgtaagaat
gaagatgtagataggaaagattgggatgcgttccatcccatcctggttgcagaaggactt
tttgctttcgccaatgttctgagctacctgcgtctcttcttcatgtacaccaccagctcc
atcttggggcctttacagatctccatgggccagatgctacaagagttcgggaagtttctt
ggcttattcctgctcgtgctcatctctttcaccatcggcctgacacagctgtatggaaaa
gaccagaaggatccatccagaaccaaagatcaaaactgcgagggcatcttctgtcagcag
cagagcaacgacacctttcacacgtttatggggacatgttatgccctcttctggtatatt
ttttccctggcacacgtggctctgttcgtcacaaggatcagctatactgaggagctgcga
tcatttgttggtgctcttatcgtcggtacctacaacattgttgtagtcatcgttctcact
aaactcctggtggcaatgctgcataagagcttcagacagattgctaaccatgaagacaag
gagtggaagtttgctcgggctaagctgtggctcagctactttgatgacaagtgtacactg
cctccacccttcaacatcctcccctcacccaagaccgtgtgctacctggtgatcagcctg
agcaaatggatctgttcccacacctccacaggcaaagtcaagagacagaatagcctcaag
gaatggaagaacctaaagcataaaagggaccagaactaccagaagattatttgctgtcta
gtgcaccgttacctgacctccacaaggcagaagatgcagagcactgaccaagccacggta
gagaacctcaacgatctgcggcaagacctatccaagttccgcaatgaaatgagggacctt
ttgggcttccgcacttcaaaatatgccatgttctaccccagaagctaa
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