Rhinichthys klamathensis goyatoka (western speckled dace): 130084763
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Entry
130084763 CDS
T09701
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04120
Ubiquitin mediated proteolysis
rkg04137
Mitophagy - animal
rkg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130084763 (prkn)
04120 Ubiquitin mediated proteolysis
130084763 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130084763 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130084763 (prkn)
04121 Ubiquitin system [BR:
rkg04121
]
130084763 (prkn)
03029 Mitochondrial biogenesis [BR:
rkg03029
]
130084763 (prkn)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
130084763 (prkn)
Membrane trafficking [BR:
rkg04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
130084763 (prkn)
Aggrephagy
Other aggrephagy associated proteins
130084763 (prkn)
Xenophagy
Other xenophagy associated proteins
130084763 (prkn)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
130084763 (prkn)
Mitochondrial biogenesis [BR:
rkg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
130084763 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
130084763
NCBI-ProteinID:
XP_056106208
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MIPCCFALLAHATCQQTPKSHTGVNLGCNRYHSMIVYVRFNSSHGFPVELERGASVSELK
EMVGRLQGVQPDQLRVIFAGRELCNESTLQGCDLPEQSTVHVVLPPSSTRRSELVLQRML
GHGTESLTRLDLSSSRLTTASEGLAVILETDASRQGDSAGHTETKGHSSFYVFCKAVCKA
IQPGKLRVRCRDCKQGTLTLSRGPCCWDDVLLPNRIHGVCQSPDCDGRLAEFYLKCAAHP
TGDNDTSAALDLIMPNTRRVPCIACTDIVTPVLVFQCAERHVICLDCFHLYCVTRLNERQ
FIQEPLVGYSLPCAAGCPDSLITEVHHFRVLGDEQYERYQRYAAEECVLQMGGVLCPAPG
CGAGLIPVADGRRVSCESGNELGCGLVFCRDCKDEYHEGSCTHTKATATGRALQGYIVDE
EAARLARWDQASQDTIAQTTHPCPKCQVPVEKNGGCMHMVCPRPQCRFEWCWVCRVEWNR
ECMGNHWFG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgtgctgctttgctctgttagcgcacgcgacatgtcaacaaacaccaaagtca
cacactggagtgaatctgggctgtaacagatatcacagcatgatcgtgtatgtgcggttt
aattccagccatgggttcccagtggagttggaaaggggtgcgagtgtatctgaactgaag
gagatggtggggcgtttgcagggcgtacagcctgatcaactgcgggtcatctttgctgga
cgagagctctgcaatgaatccacacttcagggctgcgatctccccgagcagagcacggtt
cacgtggtcctgcccccgtcctcgacccggcgctctgagctggtcctgcagcgcatgctg
ggccacgggaccgagagcttgacccgactcgacctcagtagctcccgtctgaccaccgca
tccgaaggcctggctgtcattctggagacagatgcgtccagacagggggactctgctgga
cacacagaaactaaaggccacagcagtttctatgtgttctgtaaggcggtctgcaaggcc
atccagcctggaaaactacgtgttcggtgcagagactgcaaacaaggcacccttactctc
agcagggggccgtgctgctgggatgacgtccttctccctaacaggattcatggagtatgt
cagtcaccagactgtgatggcagactagcggagttctacctgaaatgtgctgcccacccc
accggtgataatgacacttcagcagcgctggacttgataatgcccaacacacgcagagtg
ccctgcatcgcctgcaccgacattgtgactccagtgctggtgtttcagtgtgccgagcgt
cacgtgatctgcctggactgcttccacctgtactgtgtgaccagactcaatgagcggcag
tttatccaggagccgctggtgggatactccctgccctgcgcagccggctgtcctgattca
ctcattacagaggttcatcatttccgagtcctgggagatgagcagtacgagcgctaccag
cgctacgcagccgaggagtgtgttcttcagatggggggagttctgtgtcccgctcccgga
tgtggtgccgggctgattcctgtggctgatggaaggagagtcagctgcgagtcaggaaat
gaactcggctgtgggttggtgttttgcagggactgtaaggacgagtatcacgagggctcc
tgcacacacacgaaggccacagcaacaggacgtgccctacagggttatattgtagatgaa
gaagcggctcgtcttgcccgctgggatcaggcctcacaggacactatagcccaaaccact
cacccctgtcccaaatgccaagttcctgtggaaaagaacggtggctgtatgcacatggtg
tgtccgcgtccacagtgcaggtttgagtggtgctgggtctgtcgtgtggagtggaacagg
gaatgtatgggaaaccactggttcggatga
DBGET
integrated database retrieval system
