Rhinichthys klamathensis goyatoka (western speckled dace): 130084837
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Entry
130084837 CDS
T09701
Symbol
slit3
Name
(RefSeq) slit homolog 3 protein
KO
K06850
slit 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130084837 (slit3)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Axon guidance molecules
130084837 (slit3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
EGF
LRR_5
Laminin_G_2
LRRNT
EGF_TEN
Laminin_G_1
LRR_9
hEGF
LRRCT
LRR_14
EGF_DL_JAG
JAG1-like_EGF2
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
130084837
NCBI-ProteinID:
XP_056106308
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MMRWVQFWGTVAVLCGLLCSAVNGCPHKCSCSGSHVDCQGQGFRTVPRGIPRNAERLDLD
RNNITRITKVDFSGLKNLRVLHLENNQISVIERGAFLELRQLERIRLNRNRLQVLPELLF
QSTPKLGRLDLSENQIQAIPRKAFRGITAVKNLQLDSNHISCIEDGAFRALRDLEILTLN
NNNITLIPLSSFNHMPKLRTLRLHSNSLHCDCHLSWLSDWLRQRRGLAPFTQCMAPAHMR
GLNVPDVQKREFVCTGPTQTEPRSCAPQAPVCPAACTCNNNNVIDCRRKGLTEIPANLPE
GIVEIRLEQNMIKSIPKGALSMYKKLKRIDLSKNQISEIAEDAFSGLRSLNSLVLYGNQI
TEIPKGLFDGLVSLQLLLLNANKINCLRVNTFKDLQKLNLLSLYDNKLQTISKGLFAPLR
AIKTLHLAQNPFMCDCHLKWLADYLFDNPIETTGARCSHPRRLANKRISQVKGKKFRCTG
GEDYRSRLSGECFQDLVCPERCRCEGTVVDCSNLKLTKIPPHLPEHTTDLRLNDNEIPIL
EATGAFKKLPNLRKINLSNNKLRDIREGAFDGAGGVLELLLTGNKLQSVSGRMFKGLSGL
KTLTLRNNQISCVDNTTFTGLSSVRLLSLYDNRISTIAPGAFNTLHSLSTINLLSNPYVC
DCHLAWLGLWLKKTRVVSGNPRCHKPAFLKEIPIQDVAMPDFSCDGMEENVCLPSAPRCP
DSCTCSDTVVRCSNRGLRSLPKGIPKDTTELYLEGNLLTSVPKELPSLKQLTLLDLSNNS
ISLLAPLTFSNMTQLATLILSYNQIRCVPVHSFDGLRSLRLLTLHGNDLSTIPEGAFSHL
TSLSHLALGANPLYCDCGLHWLSQWVKAGFKEPGIARCTGPPDMADRLLLTTPLNRFQCK
GPADLNLMSKCAPCLAAPCQNNGTCVSDVTGSYHCTCPFGYKGRNCEIPINACISLPCIN
GGTCHLTPGLDGHYSCVCPPGYEGQQCEVNPDDCDDNDCENNSTCVDGINNYTCVCSPNY
KGDLCEEVVDPCLPGFDLCQHDSKCVPLSKGYRCECLPGYVGQQCEQDYNDCLENKCQHG
AECVDAINGYTCVCREGFSGLFCENHPPMVLLQKTSPCDQSDCQNGAQCLVVEGEPVCRC
LPGFFGIKCHKMVTVHFLGKDTYVELSGAKFRPPMHISLQVATDKDNGILLYKEDHDPLA
LELYQGHIRLIYDVAKYPPTTVYSVESVNDGLFHMVEVLIQNQTLSLVVDKGAPKSLGKL
PRPPAVDHNTQLYIGGVPSLIDTAGLRPGPDRPFQSFNGCIHDVRLNGEPQDLGGGRAGV
DGVLPGCHSCGVCVQGACRQRGEAGVTCECPTGHNGPLCEQMTSQSPCQSSRCVHGVCVP
KGSSYSCSCADGYSGQSCDRREESAACKGQHCVHGECRATESGEPVCHCQPEYSGPTCET
EVTCQGEMVRELLKRHMGHKSCTSTSKIPRVECPHACHSGLCCAPTKSRRRKVSFKCSDG
SSFSEEIETTVECGCTKCLL
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggtgggtgcagttttgggggacagtggctgtgctgtgcgggctgctgtgctct
gctgtcaatggatgcccgcataagtgcagttgttcgggctctcatgtggattgtcagggt
caaggcttcaggacggtgcccaggggaatcccgaggaatgccgagaggctggatctagac
aggaataacatcacccggatcaccaaagtggacttctctggcctcaagaacctacgcgtg
ctacatctggagaacaatcaaataagtgtgatcgaaagaggagcatttctggaactccga
cagcttgagagaatccgcctgaaccggaaccggctgcaggtcctgccggagctgctgttc
caatccacacccaagttgggccgcctggacctgagcgagaatcagattcaggctattcct
cgtaaggctttccgagggatcaccgccgtcaagaacctgcaactggacagcaaccacatc
agctgcatcgaagatggagccttccgagccctgcgcgatttggagatactcactctcaac
aacaacaacatcaccctcatcccactgtcaagcttcaaccacatgcccaagctgcggaca
cttcgcctgcactccaacagcctgcactgcgactgccacctgtcctggctgtctgattgg
ctgcggcagagaagggggctggcccctttcacacagtgcatggcccccgcccatatgaga
ggtctcaatgtccctgatgttcaaaagagagaatttgtgtgtacaggtcctactcagaca
gagccaaggtcatgtgctccccaagcgcctgtctgccctgccgcctgcacctgcaacaac
aacaacgtcatagactgccgtagaaaaggcctgacggagattcctgccaacctgcctgaa
ggaattgtggaaatccgtctggagcagaacatgatcaagagcatcccaaaaggagcgctc
tccatgtacaagaaactgaagagaatagacctgagcaagaatcagatatccgagattgca
gaagatgcgtttagtggcctgcgctcgctcaattcactggtcctgtatggaaatcaaatc
acagagatcccaaagggactgtttgatggccttgtctccctccaactgctactgctgaac
gccaacaagatcaactgtcttcgtgtgaacactttcaaagacctgcagaaactcaacctg
ctgtccctctacgacaacaagcttcagaccatcagcaaaggcctgttcgcccctctgcgc
gccatcaaaacactacacctcgctcagaatcccttcatgtgtgactgtcatctgaagtgg
ctggccgactacctgtttgacaatccaattgagaccaccggggctcgatgcagccacccg
cgccggctcgccaacaaacgcatcagccaggtcaagggcaagaagttccgctgcacaggt
ggggaggactaccgcagtcgtctcagcggcgagtgcttccaggacctggtttgtcccgag
cgttgtcggtgtgaaggaacggtggttgactgctcgaacctcaaactcaccaaaataccc
cctcacctgcccgagcacaccactgacctacggctgaacgacaatgaaatccccatccta
gaggctacaggagccttcaagaagctgccaaacctgcgcaagataaacttgagtaataat
aaactccgggacatccgtgagggggcgtttgatggggccggaggtgttttggagttgctg
ttgaccggaaacaagctgcagtcagtcagtggacggatgttcaagggtttgagcggcctc
aaaacactgacgctgaggaataatcagatcagctgtgtggataacaccaccttcactggc
ctgagctctgtgcgcctgctttccctgtacgataaccggatctccaccatcgcccctgga
gctttcaacaccctgcattccctctccaccattaacctgctgtctaatccctacgtgtgt
gactgtcacttagcctggctgggactgtggcttaagaagaccagggtggttagtggcaac
ccacgctgccataaacctgccttcctaaaggagatccctatacaggatgtggccatgcct
gatttctcctgtgacggtatggaagagaatgtctgtctgccgtcggcccctcgctgtccg
gattcctgcacatgctcggacacagtagtgcgctgtagtaaccgagggctgcgttccctg
cctaagggcatccctaaagatacaactgaactatacttggaaggaaacctcctcacatcc
gtgcccaaagagcttcctagtctgaaacaactgacactgctagacctcagtaataacagc
atcagtcttcttgcccctctcaccttcagcaacatgacacagctcgcaaccctgatcctg
agctataatcaaattcgctgtgtcccggttcattcattcgatggcttgcgttctctccgc
ttgctaaccctccacggaaatgacctttcaactattccggagggagccttcagccacttg
acatctctgtctcatctggctcttggagcgaaccccctatactgtgactgtgggctgcac
tggttgtctcagtgggtgaaggctgggtttaaagagcctggcatcgcccgctgcactgga
ccacctgacatggcggaccgactgctgcttaccacccccctcaatcgcttccagtgcaag
ggtccagcagatttgaatctgatgtccaagtgcgccccctgtctggcggctccctgtcag
aacaacggcacatgtgtgagtgatgtcacaggctcctaccactgcacctgcccttttggc
tacaagggtcgtaactgtgagattcccatcaacgcctgcatcagcctgccgtgtattaat
ggaggcacgtgccatctcacacctggactggacgggcattacagctgtgtgtgtccacct
gggtatgagggccagcagtgtgaggtgaatcctgatgactgtgacgacaacgactgtgag
aataactccacctgtgtggacggcatcaacaactacacctgtgtctgctctcctaactac
aaaggtgatctgtgtgaggaggtggttgacccctgtctgcctgggtttgacctctgccaa
catgactccaagtgtgttcctctcagtaagggctacaggtgtgaatgtttgccaggttat
gttggccagcagtgtgagcaggattacaatgactgtctggagaacaaatgccagcatggg
gcagagtgtgtcgacgccatcaatggatacacgtgtgtgtgtagggaggggttcagcggg
ttgttctgtgagaatcatccaccaatggtattgctccaaaagacgagtccatgtgatcaa
tctgactgtcaaaacggagcccagtgtctggtcgtggagggagagcccgtgtgccgttgt
ctacctggcttcttcggcatcaagtgccataaaatggtcacagtgcacttcctcggcaaa
gatacctacgtagagctctccggcgccaagttccgaccacccatgcacatatccctccag
gtggccactgataaggacaatggcattctgttgtataaagaggaccatgacccactcgcc
ttagagctgtaccagggacacattcgtttgatctatgatgttgccaagtaccccccaacc
acagtgtacagtgtggagtccgtgaatgatggtcttttccatatggtggaggtgctgatc
cagaatcagaccctgagtttggtggtggataaaggggcaccaaaaagcctgggcaaactg
ccccgcccccctgctgtggaccacaacacacaactctatataggcggggttccctctctg
attgacacggcaggcctgcgaccgggtccagaccgtccattccagtcttttaacggctgt
attcatgacgtccggctcaatggggaaccccaagacctcggcggtggacgggcaggggtt
gatggcgtcctgccgggctgtcactcatgcggcgtttgtgttcagggggcctgcagacag
agaggagaggcaggggtgacctgcgagtgtcccaccggccacaacggcccactgtgtgaa
cagatgacctcccagagcccctgtcagagcagcaggtgtgtgcatggtgtgtgtgtgcct
aaaggctcctcatacagctgctcatgtgcagatggatactctggccagtcctgtgacaga
cgggaggagtccgccgcatgtaaggggcagcactgtgtgcacggagagtgcagagcgacg
gagagcggagagccggtttgccactgccagcccgagtacagcgggccgacctgtgaaaca
gaggtgacgtgccaaggagagatggttcgcgagctcctcaagcgtcacatgggtcataaa
agctgcacatccaccagtaaaatcccccgggtggagtgtcctcacgcctgccactcgggc
ctgtgctgcgcccccaccaagagccggagacggaaggtcagcttcaagtgctccgatgga
tcgtccttttccgaagagatcgagaccaccgtggagtgcggctgcacaaagtgcctattg
taa
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integrated database retrieval system
