Rhinichthys klamathensis goyatoka (western speckled dace): 130084850
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Entry
130084850 CDS
T09701
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130084850 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rkg01009
]
130084850 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130084850 (pcdh11)
Protein phosphatases and associated proteins [BR:
rkg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130084850 (pcdh11)
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130084850 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
TMEM154
DUF6249
Prominin
AP3D1
Motif
Other DBs
NCBI-GeneID:
130084850
NCBI-ProteinID:
XP_056106338
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MDLASEAHVLVVLLTCLFLMCRAQEKDYTVKEEQPENVRIGNLRKDLNLNLDPDIKLSSA
LQFKPVYKTGDVPLVKVEASTGEIFTTANRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDGGTPPKSSTAILQVTVS
DVNDNRPVFKDIEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPATKRHF
AIDSTTGLITVKQPLDREVNPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDRDADLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDFETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVPVFPQPEIQLSIPENND
PGTQLIKISATDADSGSNALIIYSIGPDAPDGFNIDPRSGILSVVKRLDREKQEKYSFTV
IARDNGSNALQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGQMQTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKIITTDQGLHRLVVKVKDLGQPESLHAIALVHLFVNDTVSNAT
FIQEQLRKSLETPLERNIGDNDVTPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVTIEESKSDDPTHEHING
TLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGSFKAPGQIHTRQNQSQTPDKTFS
IVPTTCPHKQTQRRVTFHLPDGSQESCSDSGLGEQEPNSGASTTQPLPLGFPQEEYYEQT
SPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSCWMPPALTQFQTSGA
ATLPSFGFQQSWARGTKPDGRHTLGRSVPKDDLDKGSNRPQFYNTLERHCSKKEDTIKVI
PLASFSATSSPQTTASGVSFLREHQL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggacttggcaagtgaggcccatgttctggtggttttactcacctgcctattcttgatg
tgccgggctcaagagaaggactacacagtaaaagaggagcagccggagaatgtgcgcatc
ggaaacctgcgcaaagacctaaacttgaacctagatccagacattaaactgtcttcagca
ctgcagtttaaacctgtctacaagacaggtgatgtgcctttggtcaaggtagaagccagc
acaggagagattttcaccacagccaaccgcatcgaccgtgagaaactctgctccggagtc
ttcaatgaaaaacgctgcttttacgagatcgaggttgccgtgctaccagacgagattttc
cgactggtcaagatacgcttccttatcgaagacatcaacgacaacgccccactcttccaa
tcgacggttatcaacatctccattccagaaaacacagccatcaacagtcgctaccctgtc
ccttctgcatttgaccctgatataggaatcaatgggattcaacactacgagcttgtcaag
agtgttagcgaatttggcctggacatcattgagacgcctgaaggagacaaatggcctcaa
ctcatagtccagcagagtctcgaccgggagacgaaggacacctttgtgatgaaaattaaa
gttgaggatggtggcacacctccaaagtccagcacagccattctgcaggtgactgtctca
gatgtgaatgacaatcggccggtgttcaaggacattgaggtggaggtaaacgttcctgag
aatgccccaatgggaacatctgtcactcaccttcatgccacagatgctgatctggggtcc
aatgctcagattcacttctccttcagcaaccaaatctcccctgccaccaaacgacatttt
gctattgacagcacaactggactgattaccgtcaagcagccattggacagggaagtcaac
ccagtgcacaagcttatagtgctggccagtgacggaagctctaccccttcaagggctaca
gtgatagtcaatgtaacagacattaatgacaatgtcccctctatagacacccgttatata
attaatctagttaatggcactgtgctattgtctgaaaatgccccccttaacacaaaaata
gctctaattactgtgacagacagagatgcagatctgaacggtaaagtaacttgttacact
gatcatgatgtacctttcagactgaagccggtcttcaatgaccagtttttgcttgaaact
gccgcacctttagattttgagaccactcgcgagtatgcgattaggatagtcgcatctgac
tctgggaaacctcctttgaacacttcggcaatggttctgattaaaatcaaggatgagaat
gacaatgtcccagttttccctcaacctgaaatccagctgtccattccagaaaacaatgac
cccggcacacagttgataaaaatcagtgcaacagatgcagatagtggttctaatgccctt
attatttacagtattgggccagatgctcctgatgggtttaacatagatccccggtctggt
atcctttctgttgtcaaaaggctggatagagagaagcaggagaagtattcatttacagtc
attgccagggataatggttctaacgctcttcaaagcaatgtcaccgtaaagctaatagtc
caagaccaaaatgataacagtccagcctttacccatcccgagtacaacttctatgtgcct
gagaacctgcctttgtatggaacagttggtttgatcactgtcacggatgcagatgctggc
gataatgcagtcgtcaccctctcgatcataaatggaaaggacaatttcatcatcgaccca
aaaaccggggtgattaaaccaaacattaccttcgacagggagcaacaaagttcctacaca
tttgttgtcaaggctgtggacgcaggtcaaatgcaaaccacctcatatgccaaggtcacc
ataaacgttgttgatgtgaatgacaatcgaccggtgtttgtcatcccctcctcaaactac
tcctatgatctagtaccttcaaccaccagccctggatctgtggtgaccagagtgtttgcc
attgacaatgacacaggcatgaacgcagagctgcagtatagtattattggagggtcgccg
agaggattgtttgccattgacaaaacgacaggcaacattactctgcaggagaagattata
acgacagaccaaggtctccataggctagtggtaaaggttaaggatttgggacagcctgag
tccttacatgcaattgcccttgttcatttgtttgtgaatgatactgtttcgaatgccacg
ttcatccaggagcaactacgcaagagtttggagactcccttggagcggaacattggggac
aacgatgtgacaccccagaccaatggctacgtgattgtcgttattgccataattgctggg
actatgactgttatcttggtgatctttgtgactgctttggtacgctgtcgacagacaccg
agacacaaagttgtccagaagagcaagcagagtggtgagtgggtatcaccaaaccaggaa
ggtcggcagattaaaaagaaaaagaagaagaagaagaggtctccaaaaagtttgctgttg
aattttgtaaccatcgaggaatccaagtccgatgaccctacccatgagcacatcaatggc
accttagacctccctgttgaacttgaggagcagacaatgggaaagtacaactgggctacc
acaccgactaccttcaaacctgacagtcctgacttagccaagcactacaaatccgcttcc
cctcagccaacattccagatcaaaccagagacccctgtggctcccaagaagcatcatgtc
atccaggaactcccactggacaacacatttgtcgtgggctgtgactcactatccaaatgt
tcctccagcagctccgatccctacagcgtttcagagtgcagctgtcaagggagcttcaag
gcacctggacaaatccacaccagacagaaccagagccagaccccagataaaacattctct
attgtcccaaccacgtgccctcacaagcagacccaacgccgcgtgacctttcacctcccg
gacggctctcaggagagctgcagtgacagcgggcttggagagcaggagcccaacagcggt
gccagcaccacccagcctctgcccttgggcttccctcaggaagagtactatgaacagacc
tcaccgaacagccgcaccgagggtgacggcaactccgaccccgagtccactattgaagtc
aacctgcagaaggctctcgccgaagcctcggagacctgtacccaggaatgtctgatcctg
ggtcattctgacagctgctggatgccgccagcgctgacccaattccagacgtccggcgcc
gccactctgccctcctttggttttcaacaaagctgggcgcgggggaccaagccagatggg
cgtcacactcttggcaggtcagtgcccaaagatgatctggacaaagggagcaaccggccc
caattctacaacacacttgagagacactgcagcaagaaagaggataccatcaaggtcatc
cctctagccagcttttccgccacgtccagccctcagacgaccgcgagcggagtctccttc
ctgcgcgagcatcagctgtag
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