Rhinichthys klamathensis goyatoka (western speckled dace): 130084856
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Entry
130084856 CDS
T09701
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04120
Ubiquitin mediated proteolysis
rkg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130084856 (syvn1)
04120 Ubiquitin mediated proteolysis
130084856 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130084856 (syvn1)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130084856 (syvn1)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130084856 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING-like
zf-ANAPC11
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
130084856
NCBI-ProteinID:
XP_056106349
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MVRATLVTTISLALTGTVIAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMVLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYTLHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNQNPAPAPAQAPAPAAPAPVP
VPPPVNVAPGMIPQFPPGLFPFWGPFPGAPPPAAPGAQAATDTPQTSTDGAQGSESGASS
STQPTADSASSAPGAIPGFPFSMPPPFTSAPWLPMPPPPPFMSSMPPPPSTLSTMSEAEL
RELEQEGRRGLEARLQCLHNIHTLLDAAMLNIHHYLSTVATLSPPRSETNTGETSASVNM
ESSPSPGNTETPSQENEAQSGESVNGATGFSRPDSTTEDDKDRMEGDEDDGEPSAAELRR
RRLRKLETMPTPDH
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagccactcttgtgacgaccatcagtttggcactgactggcacagtcattgcc
catgcctacttgctcaagcaccagttctacccgactgtggtgtacctcaccaaaagcagt
cctagtatggcagttttatacattcaggctttcgtgttggttttccttttggggaaattt
atgcggaaggtctttttcgggcaactaagagctgctgaaatggagcacctgattgaacgc
tcctggtatgcagtgacggagacctgcttggcctttacagtcttcagggatgatttctcc
cctcgctttgtggcccttttcactttgctgcttttcctcaagtgcttccattggctggct
gaagacagggtggattttatggaaaggagtccaaatatctcctgggtcttccacttcaga
gttctctctcttatggtgttgctgggagtgttagactttctgtttgtcaatcatgcgtgt
cacagcattataacaagaggggcatcagtgcagctggtttttggatttgagtatgcaatt
ctgatgactatggtcctcaccaccttcatcaagtacaccttacatacagttgatctgcag
agtgagaatccatgggacaataaagctgtctacatgctgtacacagagctctttacagga
ttcatcaaggtgcttttgtatatggcgttcatgaccataatgataaaagtgcacaccttc
cctctgtttgccattcggcccatgtatctcgcaatgaggcaattcaagaaggcagtaaca
gacgccatcatgtctcgacgagccattcgtaatatgaatactctctatcctgatgccacc
cctgaagacttgcaagccaccgacaatgtgtgcatcatttgcagagaagagatggtgact
ggagccaagaaactgccgtgcaaccacatctttcactcaagttgccttcgctcatggttc
caaagacagcagacatgtcccacctgtcgtatggatgtcctccgagcatcccagccaaac
cagaatccagccccagctcctgcacaagcacctgcccctgctgctcctgctcccgtaccc
gtacctccacctgtcaatgttgctccaggtatgatacctcagtttcctccggggttgttt
ccattttggggtcccttccctggcgcacctcctcctgctgcccctggtgcacaggcagct
actgacacgccacagaccagtaccgatggagctcagggatcagaatcaggagccagcagc
tcaactcagccgactgcagacagcgcctcttctgctcctggagctatccctggattcccc
ttttccatgccgccacctttcacatcagctccatggctgccgatgcctccacctccacct
tttatgtcatccatgccaccgccaccatcaactctatccaccatgtcagaggctgagctc
agagaactggagcaggagggcaggcgaggtttggaagccaggttgcagtgccttcacaac
atccacacattgctggatgccgccatgctcaacattcaccactacctcagcacggtggct
acattaagtccgccaagatcagaaaccaacactggtgagacgagtgcatcagtgaatatg
gagtcctcaccctccccgggcaacacggaaacccccagtcaggagaacgaggctcagagc
ggtgaatcagtgaatggagctacaggcttttctcgaccagactcaaccacagaggacgac
aaagaccggatggagggagatgaagatgacggcgagccgagcgctgccgagttgagacgg
cgtcgcctccgtaaactggagaccatgcccactcctgaccactga
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