KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130084946
Entry
130084946         CDS       T09701                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rkg03041]
    130084946 (smu1b)
Spliceosome [BR:rkg03041]
 Complex B
  Other components
   Complex B specific factors
    130084946 (smu1b)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 LisH_TPL Beta-prop_EML Beta-prop_WDR75_1st WD40_Gbeta ANAPC4_WD40 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_Nup120_160 Ge1_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_WDR41 Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N WD40_RFWD3 WD_LRWD1 LisH PEP5_VPS11_N LisH_PAC1 PROPPIN LisH_WDR26 DUF3869 PALB2_WD40
Other DBs
NCBI-GeneID: 130084946
NCBI-ProteinID: XP_056106469
LinkDB
Position
Unknown
AA seq 539 aa
MDLEVESADVIRLIMQYLKENNLHRTLETLQEETTVSLHTVDSIDSFISDINNGHWDIVL
LAIQYLKLPDKLLIDLYEQIVLELIELGELGAAQCLLKQTDPMIMLKHTQPERYSHMENL
LTEPYFDSQKAYPVGSSKEKRRLAIAQAFAGEVCLVPPSRLMGLLGQGRICEGALYRLQE
TKALRQFGSLAMLSLKWQQHQGLLPPGMSLELFRGKGALKDMEEERFPTQLSRLIKFGRK
SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDEAVLCLAVSH
DSDMIASGAQDGMIQVWRILNGTCLNRLEQAHSKAVTCVCFNKDSSQLLSGSFDQIIRLH
GLKSGKTLKEFRGHTSHVNEVIFSHGGQHVISASADGMVKVWNMKTMDCSHTIKTPEIPE
GTDITVNNVVLVPKTPEHFVVCNRTNTVVVTNIHGQVMRSFCSGVRRGGDFVCCTLSPRG
EWIYCVGEDYVLYCFSTITGKLERSLTVHEKDVIGITHHPHQNLIATYSEDGLLKLWKP
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggacctcgaagtggaatccgcagacgtgattcgcttgatcatgcaatatctgaaggaa
aataatttgcaccgcactctggagacgcttcaagaggagacgaccgtctcgctccacaca
gtcgacagcatcgacagcttcatctccgatatcaacaacggccactgggatatagtgttg
ctcgcaatccagtacctgaaacttcctgacaagctgctcattgacttgtacgaacagatt
gtgctggagttgatcgagttgggtgagctgggagcagcccagtgcttactgaagcaaact
gatcccatgatcatgcttaagcacactcaacctgagcgttactcacacatggagaacctt
ctcacagagccatacttcgactcacaaaaggcatatccagtgggcagcagtaaagagaag
cgcagactggctatcgctcaagcttttgcaggagaggtctgtttggtgccgccttctcgt
ctcatggggcttctgggccagggccgtatatgtgagggggctctatacaggttacaggag
accaaagcactaaggcagtttggctcattagcaatgctgtctctgaagtggcagcagcac
cagggtctgttacctccaggtatgtcattggaactgttccggggcaaaggtgcattgaag
gacatggaggaagagcgcttccctactcagctcagtcgcctcataaagtttgggcgaaaa
tcccatgtagagtgtgctcgattctctcctgatggacagtatttgataactggatctgtt
gatggtttcattgaagtctggaacttcaccactggtaaaattcggaaggatctgaagtac
caagctcaggataatttcatgatgatggatgaggctgtgctgtgcttggcagtaagtcat
gactccgacatgatcgcctctggagctcaggatggaatgatacaggtttggagaattctg
aatggaacgtgtctgaataggttagaacaagcccacagcaaagcagtcacctgtgtctgc
ttcaacaaggacagcagtcaactattaagcggctcctttgaccagatcatcaggcttcat
ggtttgaaatcaggaaagacactgaaggagtttagaggccatacgtctcatgtaaatgag
gtcatcttctcgcacggtggccagcatgtcattagcgcatcggcagacggcatggtcaag
gtctggaacatgaagacaatggattgcagccacacaataaaaacccctgaaattcctgag
ggtacagacatcactgttaacaatgttgtgcttgtcccaaagactcctgagcactttgtg
gtgtgtaataggaccaacacagtggttgttacaaacattcatggccaggtgatgaggagt
ttctgttcaggcgtgagaagggggggagactttgtttgctgcacgttgtctccacgtgga
gagtggatttattgcgtgggagaggactatgtgctgtactgcttcagcaccatcactggc
aagctagagagaagcctcacggtacatgaaaaagatgtgattggcataactcaccacccc
catcagaatctcatcgccacatacagcgaggatggcctactcaaactctggaagccctga

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