Rhinichthys klamathensis goyatoka (western speckled dace): 130085263
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Entry
130085263 CDS
T09701
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130085263 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130085263 (cnot1)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130085263 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130085263 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130085263
NCBI-ProteinID:
XP_056106922
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGTSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGDLNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMALT
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIQDSKGLQIVVYGVQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLTPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTSHTPSMQGFPNLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSSSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QSQTPKAPLPVQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPVSEHRPMPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQ
NPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQ
LSAPKKETKPPEEMLPIVTTDSVSFTVAPSTPATTTTCTATGPPTPQFSYHDINVYALAG
LAPHITINVNIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFA
LDSEESHMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMME
EAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQ
AERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDV
AHIYDKCISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEG
LLDATSGADTDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHITEADLFHTI
ETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGL
REKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVE
ISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGI
VVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPT
KAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQ
ILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPN
LKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVEGATLNH
KTVHSRLVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTG
AS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaagaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacaatttctgatccaggagtgtgtctct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccgtcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaagaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcagtttgtgaagcagaagcttcctgaccttctccgttcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcgggcagaagggcacgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagacttaaacaagaccatgatggagagttcccttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggccctcact
cactccgggctgtcagacggcattggcctacagtccatttccaatccagtgggcggaggg
atctggagtgatgggaaggacaagagtgatgggtctcaggcccacacctggaatgttgaa
gttctgattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagcttgatcacccaggctttctgatccaggacagtaaggggcttcagatagtggtatat
ggggtccagaggggactgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagttatcgttcattcagcactccctgatgagtcctgaagtgttc
tgctttgctgactacccctgtcatacggttgctattgacatcctgaaggccccacctgag
gatgacaacagagagatagctacatggaagagcttggaccttgtggagagcctcttgcgc
ctatctgaagttgggcattatgagcaggtgaagcagctctttagctttcccatcaagcac
tgcccagacatgctggtgctggcgctgctacagatcagcacctcctggcacacactgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatc
atcttgcactatgcctggcatggacagggccagtccccctcaatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatatgaccaggccaagctatctcgt
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggagccgttcatccaggcgtgcgtcacgttc
ctgaagagacgatgtccctctatcatgggtggtttgaccccagagaaagaccagccgaag
agtgctcaacttcctcctgaaacactggctacaatgcttgcatgtctgcagtcttgtgca
gggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcctgccaaagggacgagctcccagc
actagcagcttagatgctatctcacctgttcaaatggaccctctctctgcgatgggctct
ttgagtctaggtgtctcgtccacctctcataccccgagcatgcaaggattccccaacctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctaccaaac
ccaaaccccagcacagctttcccaggaatcaaccccctctcttcgcagctccaaggtcct
ctgagctcaagcttgactgggattggctcagggttgggcatgcctgccgtcagcagtgac
cccttcggcaccaggaagatgagcacaccggggctaaaccctcccacatttcagcagagt
aagatgaaggcctctgacctttctcaggtgtggcccgaggcaaaccagcactttagtaag
gagattgacgacgaggcaaacagctatttccagcgcatctacaaccatccaccacacccc
acaatgtctgtggatgaggtgctggaaatgctgcagagatttaaggactcgaacatcaag
cgggaacgggaagtttttaactgcatgctgaggaatctgtttgaggagtacagattcttc
cctcagtatccagacaaagagctgcacatcaccgcatgcctctttgggggaatcattgag
aagggcctggtcacatacatggcgctgggcttggccttacgatacgtcctggaagcctta
cgcaaacctttcggatcaaagatgtattactttgggattgctgctctagatagatttaaa
aatagactgaaggactatccccagtactgtcagcacttggcgtcaatagcccatttcctg
cagttcccgcaccatttacaagagtatatagagtatggccagcaatccagagaccctcct
gtgaagatgcagggctccattaccaccccaggcagcctggctctagcccaggctcaagct
cagtctcagacccctaaagcccccctacctgtccaagccagcaccttagtgaccacagcc
acaacgaccaccactgctgccaaaaccaccaccatcacaagacctacagctgttggaccg
aagaaggacgtgccagtaagtgaacacagaccaatgccttcaatcaacaccacaaacatt
gacaccttgttggtggccacagaccagactgaaaggatcgttgagcccccagagaacgtt
caagagaagattgcgttcatcttcaacaacttgtcccaatcaaacatgacccaaaaggtg
gaggaactgaaagagactgtgaaagaagaattcatgccctgggtctctcaatacctggtc
atgaagcgcgtcagcattgagcccaacttccacagcctgtattccaacttcctggacaca
ctgaaaaacccggagtttgttaagatggttctcaatgagacttacagaaacatcaaggtc
ctccttacctctgataaggcagctgctaacttctcagatcgatccctgctgaagaatttg
ggtcactggcttggaatgatcacccttgctaaaaacaaacccatcctatacacagatctg
gagctaaagtctctcttgctggaggcttatgtgaaaggccagcaggagttactgtatgtt
gttccctttgtggccaaagtcttggaatcaagtctgcggagtgtgatcttcagaccgcag
aatccttggaccatgggtatcatgaatgtactggctgagctccaccaagaacatgactta
aagcttaacctcaagtttgagatcgaggtgctctgcaagaatctgtctctggacatcagt
gagctgaagccaggaaacctgctgagagacaaagagaagctgaagaatttggaggagcag
ctctctgcaccaaagaaagagaccaagcctcctgaagaaatgctgcctatagttactaca
gactcagtttcatttacagttgctccctcgactccggccaccaccacaacctgtacggcc
accgggccacccacgccacagttcagctaccatgacatcaatgtgtatgccctggctggc
cttgccccacacatcaccatcaatgttaacatcccactgctgcaggcccaccctcagctg
aagcagtgcgtgagaccagcaattgagcgtgccgtacaggagcttgtgcacccagtggtg
gaccgatcaatcaagatcgccatgaccacctgcgagcagatagtccggaaggactttgcg
ctagactccgaggagtctcacatgcgcgtggctgcccaccacatgatgcgcaacttgacc
gccggcatggccatgatcacctgcagagagccgctgctcatgagcatcgccaccaacttg
aagaacagctttgcagcagctcttagggctcccacaccccagcagagagagatgatggaa
gaggcggctgctcgcatcgcacaggacaactgtgagcttgcgtgttgctttatccaaaag
acagcagtggagaaagctggacctgagatggacaagagactggcaactgaatttgagctg
aggaagcacgctcgtcaagaaggccgccgctactgtgaccccatggtactcacctatcag
gctgagcgtatgccagagcagatcagactgaaggtcggtggagtggatcctaaacagctg
gctgtttatgaggagttcgcccgaaacgttcctggcttcctacccagtaacgacctgtct
cagcccactggtttccttgctcaaccaatgaagcaacaggcatggcccactgatgatgtg
gctcacatctacgataagtgcatctcagaccttgagcagcacctgcatgctattccacct
gcgctggccatgaacccacagacccaggccatacgcagcctcctggaggcagttgtcatg
gctaggaactcccgtgatggcattgctgccctgggacttttgcaaaaggctgtggagggt
ctgctggatgccaccagtggtgctgatactgatctgttgctaagctacagggagtgccac
ctgctggtgctgaaagccctacaggacggtcgtgcctacggtccacagtggtgcaacaaa
caaatcaccagatgcctgattgagtgcagagatgaatacaagtacaacgttgaggccgta
gagctcctcatcagaaaccacctggtcaacatgcagcagtacgacttgcacctggctcag
tccatggagaacgggctgaactacatggccgtggcgttcgccatgcagctagtgaagcta
cttctggttgatgaacgcagcgggagccacatcactgaagcagatctcttccacaccatt
gagacactgatgaggaccagtgcccactccagagccaacgctcctgaaggtttgccccag
ctgatggatgttgtccgctctaactacgaggccatgatcgatcgtcaccatggtgggcca
aacttcatgatgcactctgggatttctcaagcctcggagtatgatgacccaccaggtctt
agagagaaggcagagtacctgctgagagaatgggtcaacctgtaccactcagcagctgca
ggaagggacagcactaaggccttctctgcgtttgttggccagatgcaccagcagggcatc
ctgaagaccgatgacctcatcactcgcttcttccggctgtgcacagagatgtgcgtggag
atcagttaccgtgctcaagccgaacagcagcacccgaccaccagccctgccatcatcagg
gccaagtgctaccataacctggatgcttttgttcggctcatcgcccttctggtcaaacac
tccggagaggccaccaacacggtcaccaaaatcaacctgctcaacaaggttctgggcatt
gtggtgggtgtgttgatccaagatcacgatgtgaggcagacagagttccaacagcttcca
taccaccgaatcttcattatgctcctgctggagcttaatgcaccagagcatgtgctggag
accatcaacttccagaccctcactgccttctgcaacacctttcacatcctgaggccgact
aaagcacctggttttgtgtatgcttggctggagctcatctctcaccgcatcttcattgcc
aggatgcttgcgcacacaccacaacaaaagggttggccaatgtatgctcagctgctgata
gatttgttcaagtatcttgcacccttcctaaggaatgttgaactcaacaaacctatgcaa
attctctacaagggaacacttcgtgtgctgcttgtcctgctacacgacttcccagaattc
ctgtgcgactaccattatggcttttgcgatgtcatcccgcccaattgcatccagctgagg
aacctgatcctgagtgccttcccccgcaacatgaggcttccagaccccttcacccctaat
ctgaaggtggatatgctgagtgaaatcaatatcgctccccgcatcctcactaacttcacc
ggtgtgatgccgtcccagtttaagaaggatcttgactcttacctcaagacccgctctcct
gtcaccttcctctctgagctgcgcagcaacctgcaggtagagggtgccactctgaatcac
aaaaccgttcacagcagactcgtgtcgaatgagcctggaaaccgctacaacatccagctg
atcaatgctctcgtgctgtacgttggaacccaggccattgcccacatccacaacaaaggt
agcactccttccatgagcaccatcacgcactcggcacacatggacatcttccagaacctc
gcagtcgatctagacactgaagggcgctatctattcctgaatgcgatagccaatcagctg
cgttatccaaacagccatacacactactttagttgtaccatgctgtatctgtttgccgag
gctaatgctgaagccattcaagagcagatcaccagggtcctgctggagaggttgattgtg
aacaggccgcacccatggggtctgctcatcaccttcatagagctgatcaagaaccctgcc
tttaagttctggagccatgattttgtgcactgcgccccagagatcgagaagttgttccag
tcggtagctcagtgctgcatgggacagaagcaggcccagcaggtgatggagggaacaggt
gccagttag
DBGET
integrated database retrieval system
