Rhinichthys klamathensis goyatoka (western speckled dace): 130085356
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Entry
130085356 CDS
T09701
Symbol
acanb
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rkg00535
]
130085356 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130085356 (acanb)
04091 Lectins [BR:
rkg04091
]
130085356 (acanb)
Proteoglycans [BR:
rkg00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
130085356 (acanb)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
130085356 (acanb)
Lectins [BR:
rkg04091
]
C-Type lectins
Lecticans
130085356 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
I-set
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
130085356
NCBI-ProteinID:
XP_056107053
LinkDB
All DBs
Position
Unknown
AA seq
1310 aa
AA seq
DB search
MSLTWLLLYTCIHAIYGMIFFGDMADQDSTLSVSIPVEQPLHPLLGGSMVIPCYFLDNTV
QDPGAPTIAPLSHRIKWSYIYKGRISLILVATGGLVHVQTDYLDRVHMVNYPMVPTDATI
EISELRSSDSGTYRCEVMQGIEDNYDSVGMQVQGIVFHYRAISTRYTLTFEMAKAACIQN
SAVIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHEPREPCYGDKENFPGVRTYGVRDI
NETYDVYCFAEKMSGKVFYSMSVEKFTFAEAEDQCAKLGAQLATTGQLYLAWKTGMDVCN
AGWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDSRYDAICYEEDTNKVLT
KTSPFPEIYTTTDSMFSVATVTSSPSDYTEDVTTEGEARGQLVTDEPLNTTSIESPLLLP
YNITEVEEDAIKVATALPYLGYEIAKDNVTAKTKGVVFHYRADSRRYAYTFEEAQVACQK
LGAVIATPELLQAAYEAGLHQCSAGWLQDQTVRYPIVDPRKKCSGDQEDTPGVRSYNVRP
AHERYDVYCYMDQIKGEIFHASSLAGFTYYEAAAHCRKLGSTLASTGELYAAWNQGFHKC
SPGWLADRSVRYPVRNPGFGCGENKTGVNTIYAEPNQTGFPNPYSRYDAYCFKANLSMLL
DEDMLNATRIEKDLNMTYLQELLRPVRPIVPPLIVDLSGSGSGSASGDPDSSSGYMSGSG
IPSGSISGSGQSGEGSGHLVRFQEGADTLILQTSASGSASEAKEGSGSGSGAIIASEIES
GDQESGEESGLFQAQSGASGLPSGLSSGISGSGTSGFFSGGETSGSGVSFIDTEMIDLTA
RPSGEQELSGINPFDLTDISGSGFPSGFGSGSAIDFGSGSASGFESGSASGFGFGSGSAS
GFGSGSASGFGSGSASETSSYPSQPSGEVSGHIQKQDGEIVILIDNEVIELTFSSTIGPE
QGRGSVEISGEGSSQAQYVEEISISLSNRTLYEDYWNPNEADDPLPERNEQLNFTTQVSD
QSPLNTTPPTTVFTTSPSASQQTSKAMEEPSVTNASANSCDPNPCGHGLCSLQDGSAVCL
CHPGFSGENCSTLIKGCAEGWMEFMGSCYIHFDERETWTSAEQRCQELNSHLVSISSRQE
QEFVRTQAHDYQWIGLNDRDEQNQFRWTDGSPMEYENWRPNQPDDYFSTGEDCVVMIWHE
DGQWNDVPCNYHLPFTCKSGPVTCSSPPEVKNARMLGNRKDRYPANSIIRYQCDSGFTQR
HLSVVHCLPDGQWEEPQVECIKGKTNNRLRKRFLKALTKAVNGQTWRKVL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgacttggcttctgctgtatacatgcatccatgccatttatggcatgatattt
ttcggagacatggctgatcaggacagcaccctcagtgtgagcatccctgtggaacagcca
ctgcaccccctacttggcgggagcatggtcataccctgctactttctggacaacactgtc
caggaccctggtgccccaaccatcgccccactgtcccaccgtattaagtggagctacatc
tacaagggcagaatatcccttattctggttgccaccggtggcttggtgcacgttcagacc
gactacttggaccgggttcatatggtaaactaccccatggtgccaactgatgctactatt
gagatctcagaactccgctccagtgactctggcacctaccggtgtgaggtcatgcagggg
attgaagataactatgattcagtgggaatgcaagttcaaggtattgtgtttcactaccga
gctatttctacccgatatacattgacatttgagatggcaaaagcagcctgcatccagaac
agtgctgttattgctactcccgcacagttgcaagctgcctatgatgatggataccatcaa
tgtgatgctggctggctttcagatcaaactgtgaggtatcctattcatgagccaagggag
ccttgctatggagacaaagaaaattttccaggggtacgaacatacggagtccgagacatc
aatgagacctatgatgtgtactgttttgcagaaaaaatgtcaggcaaggttttctactcc
atgtctgtggagaagttcacctttgcagaggctgaagatcagtgtgcaaagttgggagcc
caattagccaccacggggcaactgtacctggcatggaagactggcatggatgtgtgcaat
gctggctggctagcagaccggagtgtgcggtaccccattaacatagctcgaccccagtgt
ggaggggggcttttgggagtgcgaacggtttacctgtttccaaatcagactggttatcca
tacccagactcccgctatgatgcaatctgttatgaagaagacactaataaagttttaaca
aagacctcaccatttcctgaaatatacactaccaccgattccatgttcagtgtggctaca
gtcacctcaagcccatcagactatactgaagacgtgaccacagaaggggaggcccgtggg
caactggttacagatgagcctcttaacaccacaagcatagaaagtcccctactactacct
tacaacataactgaggttgaggaggatgccatcaaagtggccacagctctgccttatctg
ggatatgagattgccaaggacaatgtcacagctaaaacgaagggagtggtattccactat
cgggctgactcgaggcgctatgcttacacctttgaggaagcacaagtggcgtgtcagaag
ctgggagcagtcatagccacccctgagctccttcaggctgcttatgaagctggccttcat
caatgcagtgcaggttggctacaggaccaaactgtcaggtatccaatcgtggatcctcga
aagaagtgctctggagatcaggaggacacccctggtgtgcgctcctacaatgttaggcct
gcacatgagcgttacgatgtgtactgttacatggaccaaataaagggggagatcttccat
gcaagttcactagcaggtttcacctactacgaagctgctgcccattgcagaaaactgggt
tctactctagcctcaactggagaactatatgcagcatggaatcagggtttccacaagtgc
agtcctggctggctggctgatcgcagtgtccgctatcctgtgcgcaacccaggcttcggt
tgtggtgaaaacaagaccggagtcaacactatttatgctgaaccaaaccaaacaggcttc
ccaaacccatactccagatatgatgcatactgcttcaaagcaaatttgtctatgctcctt
gatgaggatatgttgaatgctacaaggatagagaaggatcttaacatgacataccttcaa
gagctgctgagacctgttcgtccaattgtccctcccttgattgtggacctgtctggatct
ggatcaggttcagcatcaggagatcctgattccagttctggatacatgtcagggagtggc
atacccagtgggagcatctcaggttctggccaaagtggtgagggatcaggtcaccttgtg
aggttccaagaaggtgcagatacactgatattgcagacttctgcctcaggcagtgcttcg
gaggctaaagaaggtagtggcagtggtagtggtgctatcattgcttcagaaatagaatca
ggggaccaagaatctggagaggagtctggcctcttccaagcacaaagtggagctagtggc
cttccatcgggactcagcagtggaattagcggttcaggaacaagtggattcttcagtggt
ggggaaacgagtgggtcaggtgtgtcatttatagacacagaaatgattgatctgactgca
agaccgtctggagaacaggaattgtctggtataaacccatttgacttgactgatattagt
ggttctggctttccctctggctttggatctggctctgccattgactttggatctggctct
gcctctggctttgaatctggttctgcctctggatttggatttggatctggctctgcttct
ggctttgggtctggttctgcctctggatttggatctggctctgcctctgaaacctcaagt
tatcccagtcaaccctcaggtgaggtgtctggccacattcagaaacaagatggagagatt
gtcattctaatagacaatgaggtaattgagttgacatttagttctaccattggaccagaa
cagggtcgtggatcagtggagatcagtggagagggcagtagtcaagcacaatatgttgag
gagatctccatatctctttctaatagaactttatatgaagattactggaatcccaatgaa
gcagatgatcccctaccagaaagaaatgagcaacttaatttcaccacacaggtgtctgat
cagtcacctctgaacaccacaccacccaccactgtattcaccacttcaccttcagcttca
caacaaacgtcaaaagctatggaagagccatctgttactaatgcttctgctaactcctgt
gatccaaacccctgtggtcatggtttatgctctctacaagatggcagtgcagtatgtctg
tgtcatccaggatttagtggggaaaactgctcaacactgataaagggatgtgccgagggg
tggatggagtttatgggcagctgttacatccattttgatgagcgtgagacctggaccagt
gctgagcagcgctgtcaagagctaaactctcacctggttagcatatcctcccgacaagaa
caagagtttgtaagaactcaagctcacgactatcaatggattggactaaatgacagggat
gaacaaaatcagtttcgctggacagatggaagtcctatggaatatgaaaactggagaccc
aaccagccagatgattacttcagcacaggagaagactgtgttgtaatgatatggcatgag
gatggccagtggaatgatgtaccttgcaactatcatcttccttttacctgcaagagtggg
cctgtcacatgttcatcacctcctgaagtgaagaatgccaggatgttaggcaacaggaaa
gatcgctaccctgctaactccatcattcgataccagtgtgacagcggattcacacagcgt
cacctttctgtagtgcactgcttacctgatggtcagtgggaggagcctcaagtggaatgc
ataaaaggcaaaacaaacaacaggctacggaaaagattcctcaaggcacttaccaaggca
gtcaatggtcagacgtggaggaaggtcctctaa
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