Rhinichthys klamathensis goyatoka (western speckled dace): 130085661
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Entry
130085661 CDS
T09701
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130085661 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
130085661 (lrfn1)
Cell adhesion molecules [BR:
rkg04515
]
Immunoglobulin superfamily
SALM family
130085661 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
rkg04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130085661 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
fn3
Ig_2
ig
LRR_5
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
C2-set_3
LRRCT
Sp38
Motif
Other DBs
NCBI-GeneID:
130085661
NCBI-ProteinID:
XP_056107535
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MERLVFYVLVFGALVKAQHCPGRCICQTISPTLTLLCAKTGLLFVPPSIDRKTVELRLTD
NFITAIRRKDFMNMTSLVHLTLSRNTISQIAPHAFVGLKSLRALHMDGNRLTAIASDQLK
GLINLRHLILGNNQIHHVELTSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTTINTLTLD
HNLIDHIGVGTFTLLTKLVRLDMTSNRLQTLPPDTLFQHAQVLSDPKTSSSNKLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHQVTKPYV
MEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEVNMIPLPLFVNNTGHMREADPGLSDITTSTKSGSNDTKPQNKRVVVE
NLTANSAVIHWPSERHIPGIRMYQIQYNSTIDDTLVYRMIPSASKTFKINDLAAGREYEL
CVLAVYDDGITSLTATRVVGCVQFHTAAEAGHCRFVPSQFLGGTMIIIIGGIIVASVLVF
IIILMIRYKAYSGADGAKAKAQGDTSVSMHSQTNGSRPGRSGAKPHSEECPESPGGKDCK
ALVLLKMDEAQEELKVDLPPMCSEKAAPASRRASVCGPPSDDTHTDSSLTGSTMSLCLIG
PGSGPGPAEPLRKGPLSNMGLLPSELARTRHRFSFDGDYALFQSHSYPRRARTRRHKSTT
HLNTDASPPCSRRVTFSSTEWMLESTV
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctggtgttttatgtgctggtgttcggtgctctggtgaaggctcagcattgc
ccgggtcgctgcatctgtcagaccatctcacccacactcacgctcctctgtgccaagact
ggactgctgttcgtgccaccgtccatcgaccgcaagaccgtggagctccggctgaccgac
aacttcatcacggccatccgcaggaaagacttcatgaacatgacgagtctggtgcatctc
acgctgtcacgcaacaccatcagccagatcgctccgcacgccttcgtgggtttgaagtcc
ctcagagcgttacacatggacgggaaccggctgacggccattgccagcgaccagctgaag
ggtttgatcaacctgaggcaccttatcctgggcaataaccagattcaccacgtcgagctg
acgtccttcgacgagttcgtgtccaccatcgaggacttggatctgtcctacaataacctg
aggacgttaccgtgggaggcgatcgccaggatgaccaccatcaacacgttaacgctggac
cacaatctgatcgaccacatcggcgtcgggaccttcacgctcctcacaaagctggtacgt
ctggatatgacatcaaaccgtcttcagacgctcccgccggacacgctgttccaacacgcg
caagtcctgtcggatcccaagacgtccagctccaacaagctagccgtgagtttcggcgga
aaccctctccactgtaactgcgagttgctctggttgcgccgcctgacgagagaggacgat
ctagagacttgtgcttctccagaacacctgatggacaagtatttctggtccattcaggaa
gaggagttcatctgtgagccgccgctcatcaccaaacaccaggtcaccaaaccctacgtc
atggagggtcagggcgtcacgctgaagtgcaaggcgatgggcgaccccgatcccgctata
cactggcgctttcccgatggaaagctggtgcataacaattcccgcacgatcctgtatgac
aacggcaccctggatatcctcatcaccacgcttaaagacagcggcgccttcaactgtgtc
gcctccaacgccgcaggaatcgccacggctgccgtagaggtcaacatgatcccgctcccg
ctgttcgtcaacaacacgggtcacatgagggaggcggatccgggactctccgacatcacc
acatccaccaaatccggcagcaacgacaccaaaccgcagaacaagagggttgtggttgaa
aacctgaccgccaactccgccgtgatccactggccctccgaacgccacattcccgggatc
cgaatgtatcagatccagtacaacagcaccatagacgacaccctggtgtacaggatgatt
ccctcggcgagtaagacgtttaagatcaacgacctggcggcgggtcgcgagtacgagctg
tgtgtgttagcggtgtacgacgacggcatcacgtctctgacggccacgcgtgtggtgggg
tgtgttcagttccacacggcggcggaggcgggtcactgtcgcttcgtccccagtcagttc
ctcggcgggaccatgatcatcatcatcggcggcatcatcgtggcgtccgtgctcgtcttc
atcatcatcctcatgatccgatacaaggcgtacagcggcgccgacggggccaaggccaaa
gcgcagggagacacgagtgtgagcatgcactcgcagacgaacgggagccgaccgggccga
tccggggcgaagcctcacagcgaggagtgtcccgagtctcccggcgggaaggactgcaag
gcgctggttctcctgaagatggacgaggctcaggaggagctgaaggtggacctcccgccg
atgtgctcggagaaagcggcgccggcgtcccgacgggccagtgtgtgcgggccgccctcc
gacgacacacacacggacagcagcctcacgggctccaccatgtccctgtgtctgatcggg
cccggatccggcccaggcccggccgaacccctgcggaagggcccgctgtccaacatggga
ctcctccccagcgagctggcccggactcggcaccgcttctccttcgacggagactatgct
ctgttccagagccacagttacccgcgccgggctcgaacgcggcggcacaagtccaccact
cacctgaacactgacgcgtcgccaccctgcagccggagggtcacgttcagcagcacagag
tggatgttggagagtacggtgtga
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