Rhinichthys klamathensis goyatoka (western speckled dace): 130085720
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Entry
130085720 CDS
T09701
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130085720 (prdm1a)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
130085720 (prdm1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-met
DUF6761
zf-C2HE
zf-C2H2_15
STL11_N
Phage_zn_bind_3
Motif
Other DBs
NCBI-GeneID:
130085720
NCBI-ProteinID:
XP_056107620
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MCGWDQSVLAASHHSSAMLTTEGAPYTADNEELKMDVEDADMTKWTEEEFEEKCTYVVKD
HTWEGPVESTRAEASLPRNLAFKHPAHATEVIGVVSREYIPKGTRFGPLVGESYTAENVP
KDANRKYFWRIYSNGEFRHFVDGLDEEKSNWMRYVNPAHSQQEQNLAACQNGMSIYFYTV
KAIPADQELLVWYCPEFARRLNYPASGEIMMQKLKQSLIEAKQQATEVKHPVKREHSVSE
ILKDVLQEPSRPLPTRPRCPNTPDRPLYPSPVYPLRPSLNEDFLKSTTVFGHPTRSHRQC
SATPSPSAHSSPERSPESSPAPASLEPRDTLLSFSPALYSRGLNHYHGYSPAGPMPFYPN
PHYSRYLMPHYPVSSLSGPPTLGGMFPHMYPFYSSLIPPHVPFPPGMLPSEGGRQFLLPP
DSPAHRDLLLPAATSAFSAATSLKDKPIIHGHGHHYAPAGGSPTAGSGASTGRVPTKPTS
AILSTSRTEDEAINLSKMKRGSAGYKSLDYPLKKQNGKIKYECNVCTKTFGQLSNLKVHL
RVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHS
GEKPYQCKICPAKFTQFVHLKLHKRLHTRERPHQCPHCHRNYIHLNSLRLHLKGYCLALI
PPPSCSLDELNRVNEEIERFDISDNADRLEEMEGFDVDGMVEKQIFGLLWQEMDFKASYH
TVSTSGDRHPSTPYRLSEHGSEASVIKVHCSSPIQLLPITVKKETEEAMET
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctgggaccagagcgtcctggctgcttctcatcacagctcggcaatgttgact
actgagggagcaccctacaccgctgacaatgaggagctcaagatggacgtggaggatgca
gacatgacaaaatggacggaggaagagtttgaggagaaatgcacgtacgtggtgaaggac
cacacctgggagggtccggtggagagcacacgggccgaggcgtccctgcccaggaacctg
gccttcaaacacccggcgcacgccacagaggtcattggtgtagtaagcagagaatacatc
cccaaaggcacacgcttcggcccccttgtgggagaaagttacactgcagaaaatgtcccc
aaagatgccaacaggaagtacttctggcggatatactcaaatggagagttccgtcatttt
gtggacggactggacgaggagaagagtaactggatgcgttatgtgaatccagctcattcc
cagcaggagcagaaccttgccgcctgccaaaacgggatgagcatctatttctacaccgtc
aaggccattcctgcagaccaggagcttctggtgtggtactgccccgagtttgcccgccgc
ctcaactaccctgcctccggagagattatgatgcaaaaactcaagcagagcctgattgaa
gccaagcagcaagcgaccgaagtcaagcacccggtgaaaagagagcacagcgtttcagag
atcttgaaagatgttctgcaagaacccagcagacctcttcccacccgtcctcgttgccca
aacaccccagaccgacctctttaccccagtcctgtctatccgctccgcccttccctaaac
gaggactttttaaagagcaccacagtgtttggccacccgacacgctcccacagacaatgt
tcagcgacgcccagcccttccgcacacagcagtcccgagagaagtccagaaagcagtcct
gcaccagcatcccttgagccacgagacactcttctctccttctctccagcactgtacagt
cgaggcctgaaccactaccatggctactcaccggccggcccaatgccattctacccgaac
ccgcactactcacgctacctcatgccccactaccctgttagtagtttgagtgggccacca
accctagggggtatgtttccacacatgtacccgttttacagcagcctgatcccccctcat
gtacccttcccacctgggatgcttccatccgagggcggtcgacaattcctgcttccccct
gactctccggctcacagggatctccttctcccagcggccaccagtgccttttccgcagcc
acttctctgaaagacaaacccatcatccacgggcacgggcaccactacgcccctgccggc
gggtctccaacagccggttcgggagcctctacgggacgcgttcctaccaagcctacctca
gccattctgagcaccagccgcacagaggacgaggccatcaatctcagcaagatgaaacga
ggctccgcaggctacaaaagtctcgattatccacttaagaagcagaacgggaagatcaag
tacgagtgcaatgtttgcaccaagactttcggtcaactttccaatctcaaggttcacctg
cgtgtccatagtggtgaacgaccctttaagtgtcagacctgtaataaaggtttcacccag
ctggctcatctgcagaaacactttctggtgcacaccggagagaaaccccacgagtgccag
gtgtgtcacaagcgtttcagcagcacgagcaacttgaaaacacatttgcggttgcattct
ggggaaaagccctaccagtgcaagatctgcccagccaagtttacacagttcgtccacctc
aagctgcacaaacggctacacacacgagagcgtccgcaccaatgcccgcactgccaccgc
aactacatccacctaaacagtctccggctccatctcaaaggctattgcctagcgctcatc
cctcctcccagctgcagcctggacgaactcaaccgcgtcaacgaggagatcgaacgcttc
gacatcagcgataatgcagaccggctggaagagatggaggggtttgacgtggacggcatg
gtggagaaacagatctttggtttgctctggcaagagatggattttaaggcgtcgtatcac
acggttagcacaagcggagaccggcacccgtcgacaccgtatcgtctgagcgaacatgga
agtgaggcgtcggtcattaaggttcattgcagcagccctattcaactcctacccatcacg
gttaaaaaggagacagaggaggccatggaaacctag
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