KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130085841
Entry
130085841         CDS       T09701                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04382  Cornified envelope formation
rkg04510  Focal adhesion
rkg04512  ECM-receptor interaction
rkg04518  Integrin signaling
rkg04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130085841 (col4a1)
   04518 Integrin signaling
    130085841 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130085841 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130085841 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130085841 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rkg04147]
    130085841 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:rkg00536]
    130085841 (col4a1)
Exosome [BR:rkg04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130085841 (col4a1)
Glycosaminoglycan binding proteins [BR:rkg00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130085841 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130085841
NCBI-ProteinID: XP_056107780
LinkDB
Position
Unknown
AA seq 1640 aa
MRLPCVTVFLLTVSLSIDKSTAKGGCSGSSCGGCDCSGVKGAKGEVGLPGLMGHVGFPGL
QGHEGPPGPMGPKGDTGESGAPGMKGSRGPPGVAGFPGRPGIPGLPGLEGAPGPHGIPGC
NGTKGERGFDGIPGVPGLQGPPGIPGLRGVKGDPGGVIGVPIPQKGDRGLPGPLGSPGQK
GYPGQQGPLGPPGPIGPPGRPGETGQKGEPGDKLTFLGEKGEKGQQGLTGPPGPPGRQDE
FEGPGTIIYIPGPMGETGSKGDQGEKGFCAPHQNGIKGEQGPPGPIGKPGKDGLSGEKGE
SGFPGTSGYNGLKGDKGEKGPPGYGFGRPGPPGPPGPPGAEGETGYPGERGYPGPPGGYI
EGPTGLPGLPGEIGQKGDKGADGVSLKGPNGAAGQPGPPGLPGPINEDCNIEKGLPGPPG
PTGLQGEVGQKGDQGEKCTECTDSGPPGLPGPQGPKGQQGFPGQVGSKGEKGVPGPFGPA
GNPGQDGSPGLMGAPGAQGEPGDVFVAPGLKGDKGFPGTTGDRGFPGVDGLPGRDGQPGQ
SGAKGEPARVGIKGDRGLDGDDGTTGPPGERGPPGIPGVGQPGEPGEKGYSGLPGAPGKP
GFPGSKGEPGTVISLPGPQGAPGTRGETGRPGLQGDRGLQGEHGLPGFPGNKGDPGLPGI
GLPGPPGPKGYSGIPGPNGIPGEPGQPGQDGFPGRAGTPGQKGEPGRGLPGPKGAIGLQG
VSGFPGEKGNPGMAGVPGTEGRTGPPGPQGIKGNHGPPGVHGAVGPPGPPGLGEPGPPGP
MGPPGGPGPLGQIGIKGEKGYQGLPGLDMPGPPGDRGNPGVPGLTGSKGFPGQPGVPGKD
GFPGERGPKGEIGNMGMTGTPGFPGSIGNPGEPGQRGDPGLIGIRGEFGDSGPKGERGEQ
GLQGPPGNMTDVDMVNFKGDKGDSGDRGDPGPTGDKGFPGTRGDPGMQGKDGMPGSPGQP
GQKGDSGIPGDPGRIGEPGDTGPRGDMGYPGSTGEKGYKGVGGLPGHPGFKGFDGSKGDK
GDPGPEAIGIPGPPGEKGNVGAPGFPGEPGYKGQKGTMGIPGSPGSHGTKGDTGFIGYQG
SPGKPGEKGVSGLPGSPGDPGLAGRPGEPGLQGPPGPYGDKGEAGVDGIPGFTGERGGPG
LPGKGLPGTRGEAGSKGDKGNPGLHGIPGSSGIPGTKGEKGVQGFSGELGQPGERGLPGT
SMEGPKGDKGPQGQPGEKGATGVPGQPGFPGSVGSKGEKGDVGIPGPQGSQGYKGDKGFI
GGHGEPGLPGYNGPKGETGTQGVPGFPGIKGEVGVFGSKGDGGDRGFPGLKGSEGPPGPP
GPHTYVKGDPGLPGPQGPQGLVGIQGSPGPKGQHGVMGPQGLKGSDGTPGYDGHPGAKGE
PGQTGPSGPRGHPGPSGPDGIPGHIGPPGPSSMDHGFLVTRHSQTVDVPQCPDGTTLIYE
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPVTGQSIKPFISRCAVCEAPAMVIAVHSQTIQIPTCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFTKPVPTT
LKAGNLRTHISRCQVCMKRV
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgcggcttccatgtgtcactgtttttcttctcacggtctctttgagcatagacaagagc
acagctaagggaggatgctcggggtcttcatgtggcggatgtgactgcagtggtgttaaa
ggcgcaaagggtgaggttgggctccctggtttaatgggccatgtcggatttcctggattg
caaggtcacgagggccccccagggccaatgggaccaaagggagatacaggggagtcagga
gctccaggaatgaaaggaagcagaggcccacccggtgtggcaggtttcccaggacgccca
ggtattccaggtcttccaggtctagaaggcgcacctggacctcatggaattcccggctgc
aatggaaccaagggggagcgtggttttgatggaattccaggtgttccaggactgcaggga
ccaccaggtattccaggtttgaggggagtaaagggagatccaggtggtgttattggggta
cccatccctcaaaaaggagacaggggcttgccaggaccactcggttcaccagggcaaaaa
ggatatcctggacaacaagggccactcggcccacctggaccaattggacctcctggaagg
cctggcgaaactggtcaaaagggagagccgggtgacaagctgacatttcttggtgagaaa
ggagaaaagggacaacaaggtttaaccggtccccctggtccaccagggagacaagatgaa
tttgaaggccctggcacaataatttatattcctggaccaatgggtgaaacaggctctaaa
ggagaccaaggagaaaaaggtttttgtgcaccacatcaaaatggaatcaaaggtgaacaa
ggaccaccaggaccaataggtaaaccaggaaaagatggactgagtggggaaaagggggaa
agtggcttccctggtacttctgggtataatggcttaaagggtgacaaaggagaaaaagga
ccaccaggatatggttttggtcgtcctggccctcctggtcctcctggtccccccggagca
gaaggagagacaggttatccgggagagcgtgggtatcctggtcccccaggtggatatatt
gagggtcctactggacttcctggccttcctggagagattggccagaagggagataaagga
gctgatggagtgtctcttaaaggtccaaacggagctgctggacaacccggcccacccgga
ttaccagggccgatcaatgaagactgtaatattgaaaaaggacttccaggccctccggga
cctacaggattgcaaggagaggtgggacagaaaggcgatcaaggcgaaaaatgcacagag
tgcactgattccggacccccgggtttgcctggtccccaggggccaaagggtcagcaaggt
tttcctggacaagtagggagtaaaggagagaagggtgtgccaggaccttttgggcctgct
ggaaatcctggtcaagatggctctccgggtttaatgggtgcccctggcgctcagggtgaa
cctggtgatgtatttgtggctccagggttgaaaggagataagggttttcctggtactact
ggagacagaggattcccaggtgttgatgggctcccaggaagagatggccaaccagggcaa
tctggagccaagggagagcctgctagagttggtattaagggtgatcgtggcctggatgga
gatgatggtaccaccggccctccgggtgagagaggtcccccaggtatcccaggtgtagga
cagccaggtgaacctggtgaaaaaggctattcagggttgcctggtgcaccaggaaagcca
ggatttccaggaagtaaaggtgaacctggtacagtaataagtttacctggacctcagggt
gccccagggactcgtggagagactggcagacctggtcttcaaggtgatagaggtcttcaa
ggtgaacatggacttccaggattcccaggaaacaaaggtgaccctgggctgccaggaatt
ggacttcctgggcccccagggccaaaaggatactctgggattccaggtcccaatggaata
ccaggagaacctggtcaaccaggccaggatggctttcctggtcgtgcagggacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaagggtgccataggtctgcaagga
gtgtcaggatttccaggggaaaagggtaatcctggaatggcaggggttcctggaactgag
ggacgtactgggccacctggacctcaaggaatcaaaggtaaccatggaccgcctggagtt
catggtgcggtggggccgccaggtcctccaggacttggagaacctggaccacctggacca
atgggaccaccgggaggccctggaccccttggtcagatcggtataaagggtgaaaaaggt
tatcaaggtctacctggtttggacatgcctggccctccaggagacaggggtaaccctggt
gtcccaggtctaacaggatctaagggttttcctggtcaaccaggagttcctggaaaagat
ggcttccctggtgaacgtggtccaaaaggagaaattggaaacatgggaatgacaggaacc
cctggatttccaggttccattggaaaccctggagaacctggacaaagaggtgaccctggt
ttgattgggatcaggggagagtttggtgattcaggtcccaagggtgagaggggagaacag
ggtctacaggggccacctggtaacatgactgatgtggatatggtgaactttaaaggagat
aaaggagacagcggagacagaggtgatcctggtcctactggagataaggggttccctgga
acacgcggagaccctggaatgcaaggaaaagatggaatgccaggatcacctggacagcca
ggtcagaaaggagactctggaatccctggggacccgggacgtattggagaacctggagac
acaggtccaagaggagacatgggatatccaggttcgactggggaaaaaggttataaaggt
gttggtgggttgccggggcaccctggatttaagggttttgatggctccaagggagataaa
ggagatcctggtccagaagcaataggaatccccggtccccctggagagaagggaaatgta
ggagcccctggtttccctggtgaacctggatataagggacagaagggtacaatgggtatc
ccagggagtcctggatctcacggaactaaaggagacacaggatttattggttaccaaggc
agtccagggaagccaggtgagaaaggtgtcagtggtttaccggggtccccaggagatcct
gggttagcaggacgtccaggtgaacctggtctgcagggtcctccaggtccatatggggac
aaaggtgaagcaggggtagatggaattcctggattcactggagagagaggaggacccggt
ttacctgggaaaggactgccaggaacccgcggagaggctggcagcaaaggtgacaaaggc
aaccctggtcttcatggcattcctgggagttcaggtattcctggaaccaaaggtgagaaa
ggtgtgcaaggattctcaggggaactaggtcaacctggagagagaggacttccaggaaca
tccatggaggggcctaaaggggacaagggacctcaggggcagccaggagaaaaaggtgcg
actggtgttccaggccaacctggctttccaggcagtgttggatctaaaggagagaaggga
gatgttggcatccctggcccacaaggctctcaagggtataaaggagacaaaggtttcatt
ggtggtcatggtgagcctggattgcctggttataatggaccaaagggtgagacgggaaca
cagggtgttcctggtttccctggtataaagggtgaggtaggagtgtttggttcaaagggt
gatggaggtgatagaggattcccaggtctcaaaggtagcgaaggcccccctggaccccct
gggccgcacacatatgtaaagggagatcctggtcttccaggaccacagggtccccaaggt
ctagttggaatccaaggctcccctggaccgaaaggacaacacggtgtgatgggacctcag
ggtttaaaaggatctgatgggacacctggctatgatggacatcctggagccaaaggagag
cctggacagactggaccttctggccccagaggtcatcctgggccctcagggcctgatggt
atcccaggtcacatcggccctcctggtccttcctcaatggaccatggcttccttgtaacc
cgccacagtcagactgttgatgttccacaatgtcctgatggaacaacactgatttacgaa
ggatattcgctgctttatgtccagggcaacgagagatcacatgggcaagacctaggtaca
gctggtagctgtctaaggaagttcagcccaatgcctttcctcttctgcaacatcaacaac
gtatgtaattttgcatctcgtaatgactattcctactggctcacctctcccgagcccatg
ccaatgagcatggcccctgtaaccggtcagagcatcaaacccttcatcagcagatgtgca
gtttgtgaggctcctgctatggtgatagcagtgcacagccagaccatccagatcccaacc
tgccctcgcggttgggattctctctggatcggatattctttcgtcatgcacaccagtgct
ggtgctgagggctccggtcaggctctggcctctcctggctcttgtctggaagaatttcgt
tcggctcccttcatcgagtgtcatggtcgcggcacctgcaactactatgctaattcctac
agcttctggttagccaccatagaggacagcgatatgtttacgaaacctgtccctacaaca
ctaaaagccgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagagggta
tag

DBGET integrated database retrieval system