Rhinichthys klamathensis goyatoka (western speckled dace): 130086080
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Entry
130086080 CDS
T09701
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130086080 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130086080 (xab2)
03041 Spliceosome [BR:
rkg03041
]
130086080 (xab2)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130086080 (xab2)
Spliceosome [BR:
rkg03041
]
Complex B
Other components
Prp19-related factors
130086080 (xab2)
Complex C
130086080 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
Tcf25
DUF4515
Motif
Other DBs
NCBI-GeneID:
130086080
NCBI-ProteinID:
XP_056108196
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MPTFNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPTYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRYGRNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGRLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGQPRQIINTYTEAVQTVDPVKATGKPHNLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVEPQERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQSWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMRLLEQKAQQLAVEAEQ
DKPKPKDKILFVRSDTSRSELAQLAKQANPDEIDIDDDDEDAEDGEPDEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgacttttaacggaaaggcagacgttatattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccatattcagtaaagtgttggatgcgatatattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtgtcacagatccaacatatgaggaggtgaacaactgtcatgaaagagcacttgtgttt
atgcacaagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagcagacggacgttcgatcgggcgttacgagcgctgcccgttacccagcat
cctcgcatctggcccttgtatcttcgctatggccgtaacttgcctctcccagaaacagct
attcgtgttttccgtcgttacctaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgctccgactggccgctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctttggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactaaacgtgggagcgattatccga
ggaggtctcacccgctttaccgaccagcttggcagactctggtgttctctggcggattac
tacatccgcagcggacactttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcagtttgaagagagt
atgatcgctgccaagatggagaccacatctgaactgggacaagacgaagatgaggacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacggccgctcttatta
aacagtgtgctgctccgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctacgacggccaacctcgacagatcatcaacacatacacagaggctgtgcaaacagta
gatcctgtgaaagccacaggaaagcctcacaatctctgggtgtccttcgccagattctat
gaggataacgaacagctagatgacgctcggactatcttcgagaaggccacgaaggtcaac
tacaaacaggtggatgatcttgctgcagtgtggtgcgagtatggagagatggagctgaga
catgagaactatgaccaggctttgcgtatactaaggaaagcaacagcgattccctcaaga
aaagcagagtattttgacgcatcagaaccggtgcagaatcgagtatataaatccctgaaa
gtttggtccatgcttgcagatttggaggagagtcttggcacattccagtccacaaaggcg
gtgtatgatcgcatcattgacctccgcatcgccacacctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaagatagcttcaaggcatatgagcgtggcatt
gccctctttaggtggcctaatgtccatgacatctggaacacgtacctcactaaattcatc
gaccgatatggaggcaagaagctggagagagcacgagatctgtttgagcaggcgctggat
aggtgtcctcctaaatacgccaaaacgatctacctgctgtacgctaagctggaagaggag
tacggtttggcgcgacatgccatggctgtatatgagagagccacttcggctgtagagcca
caggaacgtcatcagatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgaacacgccaga
gacatgtgcctgcgcttcgctgacatggagagcaaacttggagagattgacagagcgaga
gccatctactcttactgctctcagatctgtgatcccaggttgaccgctcatttttggcaa
agctggaaggagtttgagattcgccacggtaacgaggacaccatccgtgagatgctgcgg
atcaaacgcagtgtgcaggccacatacaatacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccactaatgctactggaacagtgtcagatcttgctccggggcagagcgga
gtggatgacatgaggctgctggagcagaaggcacagcaactggccgtagaggccgaacag
gacaaacccaaacctaaagacaagatccttttcgtcagaagtgacacctctcgcagtgaa
ctcgcccaactggccaaacaagctaatcctgatgagattgacattgatgatgatgatgag
gatgcagaggatggggaaccggatgaagtccagttggagcagaagtctgtccccactgct
gtcttcggaggactaaaggaggactga
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