Rhinichthys klamathensis goyatoka (western speckled dace): 130086198
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Entry
130086198 CDS
T09701
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130086198 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130086198 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130086198 (col2a1a)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130086198 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
SNARE
Motif
Other DBs
NCBI-GeneID:
130086198
NCBI-ProteinID:
XP_056108379
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATQCVLLSLVRCQQEDDQEELGSCIQDGQQYADHTVWKPEPCRVCV
CDSGAVLCDEVICEDLRDCANPIIPPGECCPICPAETDEPIESIGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGTRGEKGPKGEKGNLGPRGRDGEPGTPGNPGPPGPPGPPGPNGLG
GNFAAQMAGGFDEKAGNAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPRGPSGPPGKPGSDGEAGKHGKPGERGPPGPQGARGFPGTPGLPGIKGHRGHPGID
GAKGESGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPSGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVV
GPQGSPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGGTGDPGRTGESGLPGARGLTGRPGDAGPQGKVGAPGSAGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKTGEKGLLGRPGLRGLPGKDGETGAAGPPGPAGAVGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGATGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGSAGAQGPPGLQGMPGERGAVGISGAKGDRGDSGEKGPE
GAPGKDGSRGLSGPIGPPGPSGPNGAKGETGAIGPNGAPGSRGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGDGGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGVT
GFPGAAGRVGTPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRAGDAGLRGPPGSPGEK
GDSGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGATGVKGERGNTGPIGAPGAPGSPGAP
GSVGPVGKQGDRGENGPQGPAGPPGSAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGSPGDQGAAGPSGPTGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPIGPPGNSGPPGPPGPPGPGIDMSAFAGLAQTEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKKPARSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKGKGLKHVWFGESMNGGFHFSYADSSQTPSTTSIQMN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNEVEIRAEGNSRFTYGVVED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcaatgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagagttaggcagctgcatccaa
gatggccagcagtacgcagaccatactgtatggaagccagaaccatgccgtgtctgcgtg
tgcgactctggggcagtgctgtgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacccggagagtgctgtcccatctgcccagctgaaaccgacgagcct
atcgagtcaattggtgcaaagggacagaaaggagaaccaggcgatattacagatgtagtt
ggaccaagaggacctgctggcccaatgggacccccaggagagcaaggaacacgtggcgag
aaaggacctaagggtgagaagggaaatcttggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccccctgggccaccaggacctaatggacttgga
gggaactttgctgctcagatggctggtggttttgatgagaaggcaggaaatgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggtccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgcccttggacctcgtggcccatcggggccccctggaaaacccggaagtgatggtgag
gctggcaaacatggtaagcctggtgagcgtggacccccagggcctcagggagcccgtgga
ttccccggaacacctggccttcctggcatcaagggacacagaggacacccaggtattgat
ggagctaaaggagagtccggtgctgcaggtgctaagggtgaggcaggttctaacggtgag
agcggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctggt
gcaactggttctgctggtgcccgtggcaatgatggtctgcctggtcccgctggtcctcct
ggtcctgttggtcctgctggtgctccaggtttccctggatcccctggttctaagggtgaa
gctggtcccactggagctcgtggacctgagggtgcgcaaggaccccgtggagaggccgga
acacctggatcacctggaccttctggtgcatctggtaaccctggtactgatggtattcct
ggagccaaaggatctgctggtgcttctggcattgctggtgcccctggtttcccaggaccc
cgtggcccgcccggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtattccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgta
ggacctcagggatcccctgggccatctggagaggaaggaaagagaggaccaagaggagag
cctggttctgccggacctcttggaccccctggagagagaggagctccaggtaaccgcgga
ttccccggtcaggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttcca
ggtttgaccggaccaaaaggagggactggagatcctggccgcacaggcgagtctggtctt
cctggagccagaggtctcactggacgccctggtgatgctggacctcaaggaaaagttgga
gcacctggttctgctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
actggagagaaaggacttcttggacggcctggtcttagaggtttgcctggtaaagatgga
gagactggagctgctggtccacctggccctgctggtgctgttggtgagagaggagagcaa
ggacagcctggtccatctggcttccagggtctgccaggacctactggagcccccggagag
cccggtaaacctggtgaccagggtgttcctggagagggtggtgctgccggtgccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggcgctggctctcagggtctccag
ggaccaaggggacttccaggaactcctggaactgatggacctaagggtgcaattggacca
gctggtagtgctggagctcagggccctcccggtctgcagggcatgcctggtgagagagga
gctgttggaatctctggagctaaaggtgacagaggtgacagtggagagaaaggacctgaa
ggtgctcctggcaaagatggttcaagaggtttgtctggtccaattggtccacctggtcct
tctggtcccaatggcgcaaagggtgaaactggtgccattggcccaaatggtgctcctggt
tctcgtggtgcccctggtgatcgtggtgagattggtgcacccggacctgctggctttgct
ggaccccctggtgctgatggccaacctggaattaagggagagcagggtgagtcaggacag
aaaggtgatggtggatcccctggaccccaaggaccatccggagcacctggcccagtgggc
ccaactggtgttacaggacccaagggagcacgtggagcccaaggagcccctggtgtcact
ggtttcccaggtgctgcaggaagagttggaacacctggccccaatggtaaccctggtcct
gctggccctgcaggtgctgctggtaaggatggtcctaagggagttcgtggtgatgccggt
cccccaggcagagcaggagatgctggactgcgtggacctcctggttcacctggagagaag
ggagattctggagaggatggtcctcctggtcctgatggtccttctggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaaggggtttcccagga
ctcccaggaccctctggtgagcctggcaaacagggagcatctggttcttctggtgaccgt
ggacctccaggccccgttggaccacctggattgactggacctgctggcgagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctactggtgtgaagggt
gagcgtggtaacactggcccgattggtgctcccggagctcctggttcccctggtgctcct
ggctctgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
gctggcccccctggatcagctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcact
ggtctgcagggtctcccaggacctccaggttctcctggagaccagggtgctgccggacct
tctggaccaactggcgctaagggaccatccggacctgttggaccagctggtaaggacggt
tctaacggtcagcctggacccattggaccacctggacctcgtggacgctctggagagtct
ggcccaattggtccacctggtaactcaggacctcctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttggctcagactgagaaaggacccgatcctctg
cgttacatgcgtgcggacgaggcctccagctctcttagacaacatgatgtggaggtggat
gccacactgaagtcaatcaacagccagatcgaggacatccgcagcccagacggctcgcgc
aagaaacctgcacgctcctgccgagacctgaaactctgccatcctgaatggaagagcggt
gactactgggttgatcctaaccttggtagcagtgctgatgccatcaaagtgttctgtaat
atggagactggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggagcagtaagggcaaggggctgaagcacgtgtggtttggagagagcatgaatggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccagcatccagatgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gtggcttacatggaccaagccacaggaaacctgaagaaggccgttctgctgcagggctcc
aatgaagtggagatcagagcagagggcaacagccggtttacatatggcgtggttgaggat
ggctgcaagaagcacactggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggacattgctccaatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
