KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130086277
Entry
130086277         CDS       T09701                                 
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
  KO
K19719  collagen type II alpha
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04510  Focal adhesion
rkg04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130086277 (col2a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130086277 (col2a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rkg00536]
    130086277 (col2a1b)
Glycosaminoglycan binding proteins [BR:rkg00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130086277 (col2a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 130086277
NCBI-ProteinID: XP_056108508
LinkDB
Position
Unknown
AA seq 1490 aa
MILSADSRTLLLFVATLVAFLAVVKCQDENDQDPGSCTQDGQSYSDKDVWKPEPCRICVC
DTGSVLCDDIICEELKDCSKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGTPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGSPGPQGFQGNHGEAGEPGSSG
PMGPRGPPGPSGKPGDDGEPGTPGKGGERGPVGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGESGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGGAGPPG
PVGPAGASGFPGSPGSKGEAGPTGARGPEGAQGPRGESGLPGSPGPSGISGNPGTDGITG
AKGSGGAPGIAGATGFPGPRGPPGPQGATGPLGPKGQSGDSGLAGFKGEAGPKGEIGSAG
LQGSIGPAGEEGKRGPRGEPGAAGPVGPHGERGTPGNRGFPGQDGLAGPKGAPGERGSAG
VSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGVRG
QPGVMGFPGPKGGNGEAGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGGTGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGGVGPAGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPEG
APGKDGARGLTGPIGPTGPGGPNGEKGESGPMGPSGAAGTRGVPGDRGETGPHGPAGFAG
PPGADGQPGLKGEQGEGGQKGDAGAPGPQGPSGSPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGSSGPPGEKG
DPGEDGPHGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGSPGLTGAAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGASGAPGGSGAPG
PVGPTGKQGDRGEAGPKGPSGPPGPAGARGMPGPQGPRGDKGEGGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPSGPGGARGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGETG
PSGPPGNPGPPGLPGPPGPGIDMSAFAGLSHPEKGPDPLRYMRADQAAEGNHQHDAEVDA
TLKSLNNQVEDIRSPDGTKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCNM
ETGETCVYPKPANIPRKNWWTTKGSERKHVWFGEAMNGGFNFGYGDDNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSIAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgatcctgtcggcggattcaaggactttactgctatttgtggcaacactagtcgcattt
ttggccgttgtcaaatgccaagacgagaatgaccaagatccaggcagctgcacgcaggac
ggacagtcatatagtgacaaggacgtgtggaaacccgagccatgtcgcatttgcgtttgc
gacaccggctcggtcctgtgcgacgatatcatctgcgaggagctgaaagactgttccaaa
cccgagatcccgttcggggagtgttgtccagtctgtgccgctgaccagccctcctcccct
ggcctgccaggtgctaagggacaaaaaggtgaaccaggagacataacagatgttgtggga
ccgaggggaccaggcgggccgatgggaccaccaggagaacaaggacctcgtggagacaga
ggagacaagggcgagaagggaagtccaggtcctcgtggcagagacggtgagccgggaacc
cctggaaaccccggccctccgggaccgccgggcccaaacggaaccccaggcctcggcgga
aacttcgcctctcagatggccggtgggtttgatgataaagcaggaggagctcagatggga
gtgatgcaaggaccaatgggtccgatgggtccacgaggaccaccaggccccaacggatct
cctggtccacaaggatttcaaggcaaccatggagaagccggagagcccggatcatctggc
ccaatgggtccccgtggccctcccggtccctcaggaaaaccaggagatgatggcgaacct
gggacacctgggaaaggtggtgaacgtggacctgtcggacctcagggagctcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggatattcgggtctcgacggg
gctaaaggagagtctggagccgttggagcaaaaggcgagtccggctctcctggagaaagt
ggcgctcccggacccatgggtccccgtggtttgcctggtgaaagggggcgtccaggaccg
tctggagttgctggtgctcgtgggaatgatggtttgcccggcggtgctggtcctcctgga
ccagtcggtccggctggagcttccggtttcccaggatcccctgggtctaagggtgaagca
ggacctaccggagcccgaggccccgaaggagctcaaggcccccgtggagagtctggcctc
cctggatctccaggaccctcgggaatctctggtaaccctggtactgacggcatcaccgga
gctaaaggatcagggggcgctcctggtattgctggcgctactggtttcccgggccctcgt
ggccctcctggacctcagggagcgacaggtcctctggggcccaagggacagtctggggat
tcgggtctcgcagggttcaagggtgaggctggtcctaaaggagaaattgggagcgctggt
ctgcaagggtccatcggccctgccggagaggaaggtaagcgaggacccagaggagagcct
ggtgccgctggacccgtcggcccgcatggagagagaggtactcctgggaatcgaggtttt
cctggacaagatggtctggctggtccaaagggcgctccgggtgagcgtggatctgcgggc
gtatcggggcccaagggagccagcggagaccctggacggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgtccgggtgatgccggtccacagggcaaagtcggtcca
tctggcgctgcgggtgaagacgggcggccgggacccccggggcctcagggtgtgcgtggc
cagccgggagtgatgggattccctggacccaagggtggcaatggtgaagctgggaaggcc
ggagagaagggactcgctggggctccgggtttgcgtggtctgcctggaaaagatggagag
acgggcgctgccggacccccgggacctgctggtcctgcaggagagagaggagagcagggg
cagccaggaccatcgggcttccagggtctgcccggaccccccggtccccctggtgaaggt
gggaaacccggtgatcagggtgttccaggagaggccggagccgcagggggcactggaccc
cgaggtgagcgtggtttcccaggagagagaggaggtgcggggccacagggcctccagggg
cctcgaggtttaccaggaactccaggaaccgacggacccaagggtggcgtcggtcccgca
ggaactcctggagctcaggggcctccgggattacaggggatgcctggagagagagggacc
tctgggattcctggaccaaagggggacagaggtgataatggtgagaaaggacccgaagga
gctcctgggaaagacggcgcaagaggtttaacgggtccaatcggtcctacagggcctggg
ggacccaacggtgaaaagggagaatctggacccatgggaccgtctggagctgctggtact
cgcggtgttcctggcgacagaggagagaccggtcctcatggtcctgctggttttgctggt
ccacctggtgcagatggacagcctggccttaaaggagagcagggtgaaggcggacagaag
ggtgatgctggggccccgggccctcaggggccttctggatctccaggtcctcagggacca
actggtgtgtctggaccgaaaggagctcgtggtgctcaaggacctcctggtgccacaggt
ttccctggagccgcaggaagagtcggccctcctggtcctaatggtaacccgggtccctct
ggtcctgctggtcctcctggtaaagatggtccgaagggtgttcgtggagacggtggtcct
cctggaagacccggagacgctgggttacgtggatcgtctggtcctcctggtgagaaggga
gatcctggagaagatggtcctcacggtccggatgggccgtcgggtccccagggtttggct
ggtcagcgtgggattgttggactcccaggacagcgtggagaaagaggtttcccgggcctt
cctggaccctctggtgagcctgggaaacaaggagctcctggtggatctggagaccgtggg
ccgcctggacccgtaggatcaccgggactgaccggagccgctggagaacccgggagagag
ggcaaccctggatctgatggtcctcctggccgagatggttctgcaggaataaagggtgac
cgaggtgacactggtccagctggggcttctggtgctccgggtggttctggtgctcctggt
ccagtcggacccactgggaaacagggagaccgaggagaggctggacctaaaggaccttct
ggacctccggggcccgctggagctcggggaatgcctggaccacaagggccgcgtggagat
aagggagaaggtggagattcaggtgagagaggacagaaaggacacagaggcttcaccggt
cttcaaggtctgcctgggcctcctggtcaacctggtgaccaaggtgcttctggaccttct
ggacccggtggagcaagaggaccgccaggccctgttggtccagctggaaaagatggatca
aatggtttgcctggacctattggaccccccggacctcgtggtcgttctggagagactggg
ccatccggcccccctggaaatcctggaccccccggtcttcctggcccaccgggacctggc
atcgacatgtctgcgtttgctggtctgtctcaccctgaaaagggtcctgatcccttgagg
tacatgagggcagaccaggccgctgaaggcaaccatcagcacgatgcagaggtggacgcc
actctgaaatccctgaacaaccaggttgaggacattcgtagcccggacgggactaaaaag
agcccggcccggacctgcagagacctgaagctctgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgttgatgctatcaaggtgttctgcaacatg
gagaccggtgagacttgcgtctatccaaaacccgccaacatcccacgcaagaactggtgg
actaccaagggttctgaacgcaaacatgtttggtttggagaagccatgaatggtggattc
aattttggctatggagacgacaatctggcacctaatacagcaagtattcagatgacgttc
ctgagactgctgtccacagaggcctcgcagaacctcacataccactgcaagaacagcatt
gcctatatggacgaggccactggaaacctgaagaaagctctactgctccagggatccaat
gatgtggaaatccgagcggagggcaacagtcgcttcacatacagtgttcttgaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcatcgagtacaaatcacagaagact
tcgcgcctacccattgtagacattgcacctatggatattggaggagcaaatcaggagttt
ggagtggacgtgggcgccgtctgtttcttgtaa

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