Rhinichthys klamathensis goyatoka (western speckled dace): 130086766
Help
Entry
130086766 CDS
T09701
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130086766 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rkg03041
]
130086766 (prpf4)
Spliceosome [BR:
rkg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130086766 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_Aladin
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
130086766
NCBI-ProteinID:
XP_056108924
LinkDB
All DBs
Position
Unknown
AA seq
520 aa
AA seq
DB search
MYSVIARQIFETMSDEDEVPIVKRARIFYGSLEEKEKERLSRLSRDGTSTKDAVKAGIDS
GHINISSGESMEMEERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLF
GEGPADRRERLRNVLSVVGPDALKKSKKEDDKSKRSQDEYQQTWYHEGPSSLKEARLWLA
KYSLPRAVQRLDDARAQREIPESTRTVKQQELHKNLRNVNNFCSQIGDDRPISHCQFSPN
SKLLVTASWSGLCKLWKVPDCTLIRTLRGHITNVGAISFHPQATLTLEESDVNMASCAVD
GSVKLWSLDSDEPIADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQE
GHSKGVHDLHFHPDGSLAGTGGLDSFARVWDLRTGRCIMFLEGHLKEIYSLNFSPNGFHV
ATGSGDNTCKVWDLRQRRCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKVWTHPGW
SPLKTLAGHEGKVMGLDLSPDGQLIATCSYDRTFKLWMAE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtattctgtgattgccagacaaatatttgaaacaatgtcggatgaagacgaagttcca
attgtgaaaagggccagaatcttctatggaagccttgaagaaaaggagaaggagcgtctt
agtcgtcttagtcgtgatggaacatctaccaaagatgctgttaaagctggcattgattct
ggacatattaatatctccagtggtgagtccatggagatggaggagcgcgtgagtgagcgt
caggctgaagtgctggcagagtttgagcgcagaaaaagagccagacaaatcacagtctcc
actgatgatgtggaggtcaaggcctgcctccgagctcttggcgagccaatcacgctgttc
ggggaggggcctgcggacagacgggagagattgaggaacgttctttcagtagttggtcct
gatgccttgaagaaatcaaagaaagaggatgacaaatctaaacgctctcaagatgagtat
cagcagacatggtaccatgaaggaccttcatctctgaaggaggcacgtctttggttagcc
aagtattcactgcccagagcagtgcaaaggttagatgatgcaagagcccaaagagagatt
ccagagtctacaagaacagttaaacaacaagagcttcacaagaacctccggaatgtgaat
aacttctgcagtcaaattggtgatgaccgtccaatatctcactgccagtttagccccaac
tctaagctgcttgtgacggcatcatggagtggcttgtgtaaattgtggaaagttccagat
tgtacgctaattcgcacattaagaggtcacattaccaacgtgggagcgattagctttcac
cctcaagccacactcacacttgaggagtcggatgtcaatatggcctcctgtgctgtcgat
ggatccgttaagctgtggagtttagacagtgatgagccaatagcagacattgaggggcac
tctatgagggtggctcgggtggcctggcatccctctggacggtttttgggcacaacttgc
tatgataactcatggagactttgggatcttgaggtccaagaagaaattctgcatcaggag
ggtcacagtaaaggtgtccatgacctgcacttccacccagacggctctctggcaggaact
ggtggtttggattcatttgcccgtgtctgggaccttcggactggtcgttgcatcatgttc
ctggagggccacctcaaagagatctacagcctcaatttctcaccaaatggctttcatgtg
gcaacaggaagtggcgataacacctgtaaagtgtgggaccttcgtcaaagaaggtgtata
tacacaatccctgcccatcagaacctcgtgtcctcagtcaagttccaacctaacgatggc
cattatttgctgactggtgcatatgacaacacagcaaaagtgtggacccatcctggctgg
tcacctctgaagactctggcggggcatgaggggaaggtcatgggactggacctttcacct
gacggacagctcattgcaacctgctcttatgaccgaaccttcaaactctggatggcagaa
tga
DBGET
integrated database retrieval system
