Rhinichthys klamathensis goyatoka (western speckled dace): 130087011
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Entry
130087011 CDS
T09701
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04120
Ubiquitin mediated proteolysis
rkg04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130087011 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130087011 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130087011 (mgrn1b)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130087011 (mgrn1b)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130087011 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130087011
NCBI-ProteinID:
XP_056109191
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDTDTPTDEGVKPRALYGV
EFTFDSDARVAITIYCQAFEEFSNGMAIYSPKTPALVSETVYYKRGVSQQFTLPAFKIDL
SEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQSMDHDEHSSSDSVPP
GYEPISLLEALNGLGGGSPGIPSAPLYDEINFSGSLSGESRQLSSPDHSGDSGGQKSKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQAHMLLSSSPAPTEGTVGEDAPDSLSPEDEDG
LNLEEEAMNDCSSEHSSFTKTDSDPPGDLSLPGLSGSTESLNTQSTCCSSQPLLGPSSHF
HMDDEELDF
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaattcttagtcgaagaatcgctggtgttgaggacatcgacatccaggctaat
tctgcctacagatatcctccaaaatcaggaaactattttgccagccactttttcatggga
ggagagaagtttgacacccctcatccagagggttaccttttcggggagaacatggatctc
aactttcttggtaaccgtccagtgcagtttccctatgttactccagcaccccatgagcca
gtcaagactttgagaagtcttgtcaacatcagaaaagactcattacgattggtcaggtat
aaagatgatactgatactcctactgatgaaggagtaaaaccaagggccttatatggagtg
gagttcacctttgactcggatgcacgagtggccatcaccatctactgccaggcttttgag
gagttttccaatgggatggcaatatacagccccaaaacccctgcgttggtctctgaaact
gtatattacaaaagaggggttagccagcagtttaccctgccagccttcaagattgattta
tctgaatggaaggaagaagatctcaactttgatttggacagaggtgttttccccatggtg
attcaggctgtggttgatgaaggagatgattgtttgggacatgcacatgtactgctggca
gcattcgaaagacatgttgatggcagtttctcagtgaaacctttgaagcagaaacaaata
gtggatcgcgttagttacttgttacaggagatttatggaattgagaacaagaacaatcaa
gagacaaagccatctgatgatgaaaacagtgacaacagcaatgagtgtgtggtgtgtctg
tcagatttgcgggacactctgattctgccctgcaggcacttgtgtctgtgtaactcctgc
gctgatactctacgctaccaggccaacaattgcccgatctgccgactaccgtttcgagct
cttcttcagatccgagctgtaagaaagaagcctggagcgctctctcctgtttccttcagc
ccagtgctggcgcagagcatggaccacgatgagcactccagctcagactccgttccccct
ggctatgagcccatctccctgctggaggctttgaatggtcttggtggcgggtcccccggc
attccttctgcgcctctgtatgacgagatcaacttctctgggagcctgagtggagagagc
cggcagctcagttcacctgaccactctggagatagtggcggacagaagagcaaagtcagc
aagtcaccagacagcactctacgctccccatcatccccgattcaggaggaggatgaagaa
aaactgtctgagatgtctgatgctcaagctcacatgctgctgtccagcagtcccgcgccc
actgagggtacggttggcgaggacgcccccgattcactgtctcctgaagatgaggatgga
ctgaatttggaggaagaggccatgaatgactgtagcagcgagcacagcagctttaccaaa
actgatagtgacccacctggagacctgtccctccctggattgtctggctcgactgaaagt
ctgaacactcagagtacctgctgctccagccagccgctcctcggtccctcaagccatttt
cacatggacgatgaagaactggatttttaa
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integrated database retrieval system
