Rhinichthys klamathensis goyatoka (western speckled dace): 130087130
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Entry
130087130 CDS
T09701
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130087130 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130087130 (mtrex)
03041 Spliceosome [BR:
rkg03041
]
130087130 (mtrex)
03009 Ribosome biogenesis [BR:
rkg03009
]
130087130 (mtrex)
03016 Transfer RNA biogenesis [BR:
rkg03016
]
130087130 (mtrex)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130087130 (mtrex)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130087130 (mtrex)
Spliceosome [BR:
rkg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130087130 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
130087130 (mtrex)
Ribosome biogenesis [BR:
rkg03009
]
Eukaryotic type
Pre-60S particles
Helicases
130087130 (mtrex)
Transfer RNA biogenesis [BR:
rkg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130087130 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
130087130
NCBI-ProteinID:
XP_056109330
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAQSGKTPNKADKSQGDSAAVRKRDEENDAPD
EVVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPASEEYTPLKPRVGKA
AKEYPFLLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDVGDSGGNTGGKWDPKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFSNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAI
GKQLLKGTADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPRYCLPFLQPGRLVRVKKEDL
DFGWGVIVNFQKKANVKVGGGDVDPLFVVEVLVHCSKDSVKNAATEAAKPAGPGEKGEMQ
VVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPSLEAVYTLCEKKALIAGDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVNEDTYLNQFRPHLM
DVVYTWANGSSFAQICKMTDVFEGSIIRCMRRLEELMRQMCQAAKAIGNTELENKFATGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaagcaactccaaagtccgcagctcagtcagggaagacgcccaataaagccgat
aaatcgcagggcgattctgcagcggtccgcaaaagagatgaagaaaatgacgctccagac
gaggtggtgcttgggaaaagacaaaagctggaaacagtatcagccgaggagatcaatctg
tcagagctcatgcctaaagtgaaagcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgccagtgaggaatacactccgctgaaaccacgtgttggaaaagct
gctaaggagtaccccttcttactcgaccctttccagcgcgaggccatcctgtgcatcgac
aacaaccagtctgtgcttgtgtcggcccacacgtcggcaggaaagacagtgtgtgcagag
tatgccattgctctggcgctccgagaaaagcagcgagtcatcttcaccagtcccatcaaa
gctttgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatg
accggtgacgtcactattaaccccacagcttcctgtctggtcatgaccaccgagattttg
aggagcatgctttacagagggtccgaggttatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagagcgtggagttgtgtgggaggaaaccatcatccta
ctgccggacaatgtgcaccatgtcttcctgtcagccaccattcccaacgctcgacagttt
gcagagtggatttgtcacctccacaaacagccctgtcacgtggtgtacacagactaccgc
cccactccactgcagcactatgtctttccagcagggggcgatggactccatcttgttgtg
gacgagaacggagacttcagagaagacaattttaacaccgctatgcaggtcctgagggat
gtaggggacagtggaggcaacactgggggcaaatgggaccccaaaggcagaaagggtgga
accaaaggtccatctaacgtcttcaagatcgtaaagatgatcatggaaaggaacttccag
ccggtgatcatcttcagcttcagtaagaaagaatgtgaggcctatgcactgcaagtggct
aaactggatttcaacacagacgacgagaaaaaactggtggaagaagtgttcagcaacgcc
acagactgcctctctgatgaagataaaaagctgccacaggtggagcatgttctgccgttg
ctgaagagaggaattgggattcatcacggcggcctcctcccgatcctcaaagagaccatt
gagatcctgttctctgagggtctgataaaggccttgtttgctacagaaacatttgccatg
ggaatcaacatgcctgcgcgaacagttctcttcaccagtgcacgcaaatttgatggcaaa
gacttccgctggatcacctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggatgagaggggaatagtcattttcatggtggatgagaagatgagccctgcgatt
ggcaaacagttactgaagggtacggcagatcctctgaacagtgcattccacctgacctac
aacatggtgctcaatctactgcgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaag
ctggaggaggagtataatgcaatacgaatccccaatgaagagagcgtggtgacctactac
aagatccgtcagcagctggccaaactgggcaaggaaatcgaggagtttgttcacaaacct
agatattgcctgcccttcctgcagccgggcagactggtcagggtgaaaaaggaagatctg
gattttggttggggtgtaatcgtcaatttccaaaagaaggcaaatgtcaaggtcggaggt
ggtgatgttgacccgttgtttgtggtggaggttctggtccactgcagcaaagacagcgta
aagaacgcggccacagaggcagccaaaccagcgggcccaggggaaaagggcgagatgcag
gttgttcctgtgattcttcatctcatcacctccattagctctgttcggctctacatcccc
aaagatctgcggccctatgacaaccggcagagcatgcttaaatccatacaggaggtgcag
aaacgtttcccagatggcgttccgctgcttgatcccatagacgacatgggtatcaaggat
ccagcgctgaagaaggtcattcagaaggtggaggcattcgagcaccggatgtacacgcac
cccctgcacagcgaccccagcctggaggcagtttacacactgtgtgagaagaaagcgctg
attgcaggggacattaaagcggcgaagcgtgagctgaagaaagctcgtactgtgctgcag
atggacgagctgaagtgcagaaagcgtgtgttgcggcgcctgggattcgccacttcctct
gatgtcatcgaggtgaaaggccgtgtggcctgtgagatcagcagtgctgacgagctgctg
ctgacagagatggtgtttaacgggctgttcaacgacctgacggcggagcaggccaccgca
ctcctcagctgcttcgtcttccaggaaaacgctaatgagatgcccaaactgacggagcag
ctggcgggacccctgcgacagatgcaggaatgtgccaagcgaattgctaaggtgtccgca
gaggccaagctggacgtgaacgaggacacttacctgaaccagttccgcccgcacctgatg
gatgtggtctacacctgggccaacggctcctcgttcgctcagatatgcaaaatgacagat
gtgtttgaaggcagtattatccgctgtatgcgcagattggaggagctcatgaggcagatg
tgccaggcggccaaggccattggaaacacggagctggagaacaagtttgcaacgggtata
acgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
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integrated database retrieval system
