Rhinichthys klamathensis goyatoka (western speckled dace): 130087283
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Entry
130087283 CDS
T09701
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a
KO
K07603
collagen type XVII alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130087283 (col17a1a)
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Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130087283
NCBI-ProteinID:
XP_056109511
LinkDB
All DBs
Position
Unknown
AA seq
1384 aa
AA seq
DB search
MDKLTTTKIVKVEGGSGGSVKDIQKHTETVTTTRLTSLPPKGNSSSLSGQQVVTSIVNSS
GSGGASAVLLEKKIISQTSAEGGASRSYVISSSSSGSSSSGAGSVIGGFDGLSREISVTG
PISSSMVKSSSSVVKSSSGVSSSITTGGSSSATGGGLSSGFGSISSSEFASGSSGGSVSA
SGGSMNTSRGGGGGAGSSAVMSAGGASTMTVTKFSSSSPSGTRKGLSYSTVPAERKTSLH
LYTGGYEGGSSGNSSPEYTKKEYGSSSVATRGRTQTRESEIRARLQSASPSTRWTELDDV
KRLLKGSRSGSISPPRSPTNTLPIPKKASVDTRHDSQSGCDGSVLDAGFSGYYTNPNNLS
YTTLQQPSLTGGMQNNRTLSSSPLGSAVYGMQNNLSTSGGALMANGMSVGHVYGSPKNVG
STGLGTNFTAVPSSPITSDDVFVKDGKFIAIGKDNVAAKKETERLIMSKNTGKQFVSSTT
SAGADTFSEDSLKREKKMISSTMQTTTASKASTKDKATYAEIRKDESDDTGLGFCSCCSW
WKWLLALIIGLLLLLGLLCGLIALGEEVRKLKARVDALDGGGSVGSARTSRLSSSSAVNI
VDPLESSYGERISGVRADNTINLGSEPAAQDPLVLQRTIQQILRSELQSDTVRASLATSL
RGERGETGPKGDQGPPGVKGEPGFPGIPGPHGLIGHPGQEGPRGPKGSSGESGTDGLPGP
RGREGPAGPRGAPGPPGIGEKGEKGSSGDVGAPGLAGPGGPVGPKGDAGAQGIPGLTGAP
GPQGFRGDSGDPGPKGDKGPAGPSGVKGDQGERGPRGTTGEPGLVGPAGPPGEKGLKGSA
GAPGPDGVKGIRGDQGPIGLPGARGPQGPPGDAGIPGTPGLQGPPGLPGIPGQPGSKGDA
GEPGRVISAGANTNTVAIPGPPGPPGTAGPAGPPGLSGPIGPAGLPGSPGSKGDKGDKGD
DGKPGVSERAGKEAAAERGPPGPPGPPGPPGDDGKPGVGQPGPPGEKGEPGSFVPTSETF
FAGPPGPPGPIGSQGDIGPQGFPGQPGLPGEPGIGFPGQPGPPGPRGEQGTEGPQGPQGP
QGPMGSMGLEGPKGDAGVPGAPGIPGYSYGGGSRSAPGPPGSPGPPGPPGAPGSPSGGSP
DVAQQISDYLRSEPIREYLAGPPGPPGPPGPSGSASDDTLANRVIDYLQRDEVRQYLIGP
PGPPGPPGVPGGYGFNTQEVAGRVLNLINDAGFRGLPGPPGPPGPQGPPGSSGGIVSYAV
NENQQQIRAERQEYIKRHPSGDENLDYPAIAKQVADYIKSNGLLQGQGMPGAPGAEGRHG
ARGLPGAKGETGPPGISVELTNMTEIMDYIRDNHMIGPQGQKGEMGHRGPAGPPGAVGLR
DTRK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctaaccacaaccaagattgtcaaagtagaggggggatctggaggatctgta
aaagacatccagaaacataccgaaactgtgacgaccacaagactgacatctctaccgcca
aaggggaacagcagctccctgagcggccaacaggtagtgacctccatagtgaacagctcc
ggctctggaggagcttcagctgtcctgctggagaagaagatcatctctcagaccagtgct
gaaggcggcgcttccagaagctatgtcatatcctcctcttcctctggaagtagcagttca
ggagctggatctgtgattggtggatttgacggattatctcgtgaaatcagtgtaaccggt
ccgattagtagctcaatggttaaaagctctagttctgtggttaaaagctctagcggcgtc
tctagctccatcacgacaggtggcagttcctcagcaacgggtggaggtctttcttctgga
ttcgggtccatctcgtcctctgagtttgcgtctggttcttcgggcggttctgttagtgct
tctgggggtagtatgaacacatccaggggtggaggaggtggtgctggctcttctgcagtc
atgtctgccggaggagcttccaccatgactgtcaccaagttcagctcctcgtctcctagt
ggaacaaggaaaggtttgagttacagcacagttcctgctgagaggaaaaccagtttgcac
ctttacactggaggatatgaggggggctccagtggcaattcctcccctgaatacacaaag
aaagagtacggttcgtcaagcgttgccaccagagggcgcactcagacacgagagagtgag
atcagagccagattgcagagtgcttcaccctccactagatggacagagctggatgatgta
aagagattactgaagggaagtcgctccgggagcatcagtccacctcgctctcccaccaac
actctgcctatcccgaaaaaagccagcgtggacacccgccacgacagccagtcaggttgt
gacggctcagtcctggatgctggattcagtggatattacaccaacccaaacaatctcagt
tacaccacactgcaacaaccatcactcacaggtggcatgcagaataatcggaccctcagc
tcatctccccttggtagtgcagtgtatgggatgcagaataacctgtcaacatctggcggt
gctctcatggctaatggaatgagtgttggccatgtgtatgggtcaccgaagaatgttggc
agcactggattgggcaccaattttactgctgttcccagcagccctatcacctctgatgat
gtgtttgtgaaagatggcaagtttattgcgattgggaaagataatgtagcggctaagaaa
gagactgagagactgatcatgtccaaaaacactggcaaacagttcgtcagttccaccacc
agtgctggagcagatacattttctgaagattcactcaagagggagaaaaagatgatctcg
agcaccatgcaaaccaccactgcttccaaagcctcaacgaaagacaaggcaacctatgca
gagatccgtaaagatgagtcggacgacacaggactgggattctgttcctgctgctcgtgg
tggaagtggcttctggcgttgattattggtcttctccttctgctgggactcctctgtggt
ctcatcgcactgggcgaggaggtcaggaagctgaaggctcgtgtggacgctcttgatggt
ggaggaagcgtaggctctgctcgaaccagtcgcttgtcctcctcctcggctgtcaacatc
gtggatccactggagtcttcatacggcgagcgcatctccggtgtccgtgccgataacact
ataaacctgggttcagaacctgctgcacaagaccctctggtcctgcagaggaccattcaa
cagatcctcagatctgaactgcagtcagacaccgttagagcttcactggcaacttcactt
aggggtgagagaggagaaactggccctaaaggagaccaaggacctcctggagttaaaggt
gaaccaggatttcccggaattccaggtcctcatggtctcattggtcaccctggacaggaa
ggccctcgagggcccaaaggaagttcaggtgaatccggaactgatggtttaccagggccg
agggggcgggaggggccagcgggtcccagaggagcaccgggacctccaggaattggagag
aaaggagaaaaaggctcttctggcgatgttggtgcacctgggctagcaggaccaggaggt
cccgtgggacccaaaggggatgcaggtgctcaaggcataccgggtctgacaggagctcct
ggaccccaaggcttccgtggagattctggtgatcctggacccaagggtgataaaggacct
gctgggccatctggggtcaaaggtgatcaaggagagagaggaccacgtggtaccactggt
gagccaggtctggtgggaccagcagggcctcctggagagaaaggtcttaaaggatcagca
ggtgctcctgggccagatggtgttaaaggaattcgaggggaccaaggtccgattgggttg
cctggagctcgggggccacaggggcctcctggagacgcaggaataccaggtacaccagga
ctccaaggcccaccaggtttgccaggtatcccaggccagccaggctccaaaggtgatgcc
ggtgagcccggaagagtcatttctgcaggcgctaatacaaacactgtggctatacctgga
ccacctggacctcctgggactgcaggtcctgctggaccacctggactatcaggtcctatt
ggtcctgctggtcttcctggttcacctggttcaaagggagataaaggagacaaaggagat
gatgggaagcctggagtctccgagagagcagggaaggaagctgctgctgaacgtggtcct
cctggcccaccgggaccacctggacctcctggtgacgatgggaaaccaggtgttggtcaa
cctggtcctcctggtgaaaaaggtgaaccaggaagctttgtacccacttcagaaaccttc
tttgctggaccgcctggccctcctggacccattggatcacaaggtgatattggccctcaa
ggattccctggccaacctggattacctggagaacctggaatcggttttccaggacagcca
gggccaccaggaccacgtggagaacagggtacagagggtccacaaggaccgcagggacct
caaggaccaatgggttccatggggctagaaggtccaaaaggtgatgctggagtcccaggg
gcccctggcattccaggttattcctacggtggaggatccagaagcgctccaggaccacca
ggttcacctggacccccagggcctcctggagcacccggttcccctagtggcggctcacca
gatgttgctcagcagatttcggactacctcagaagtgaacccatcagagaatacctggct
ggacctccaggcccacctgggccaccgggaccttccggatcagcctctgatgatacactg
gctaaccgtgtcattgattaccttcaaagagatgaggtgagacagtacctgattggtcct
ccagggcccccaggacccccaggtgtgccaggtggatatggctttaacactcaggaagtt
gctggacgagttctgaatctgatcaacgatgctggtttcagaggtctaccaggacccccg
ggccccccgggacctcaaggaccaccaggaagctctggaggaatagtgtcttacgcggtg
aatgaaaaccaacagcaaatccgtgcagagcgtcaggagtacatcaagaggcacccaagt
ggtgacgagaatttggattatccagccatcgctaaacaggttgcagattacattaagtct
aatggcctgttacagggccaaggtatgccaggagcaccaggagcagaagggcgtcatggg
gctagaggactaccaggggctaaaggagaaacagggcctccaggaatcagcgtagaactg
accaacatgactgaaatcatggactatatcagagataaccatatgattggaccacaaggg
cagaaaggggagatgggacatcgaggacccgcaggacccccaggagccgtaggactgaga
gatactaggaagtga
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