Rhinichthys klamathensis goyatoka (western speckled dace): 130087526
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Entry
130087526 CDS
T09701
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130087526 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Ig_DSCAM-DSCAML_C
DUF4992
VWA_3
Motif
Other DBs
NCBI-GeneID:
130087526
NCBI-ProteinID:
XP_056109829
LinkDB
All DBs
Position
Unknown
AA seq
2963 aa
AA seq
DB search
MGCLLQWTVLLAVLLSLPSCSTAQGQCNDVVAADIVFLVDGSSSIGRANFVLVKSFMAGI
VQPFAKAVGPNGIRFGVVQYSDTARVEFTFTAYLNGTELINAIENINYKGGNTRTGAGLK
YIADNFFNPASIRDVPKITVLITDGKSQDNVQEPSQKLRSLGVKIFAVGIKSADPTELNL
IASPPQSDFTSQIGNFKALSSLLPLVSRRVCTTSGGSYLSDEAYSGPSDLQISGETTNSL
RFRWTSAGGPVSGYVVQYRPLSGLGQPITAELRQETIPSNQQSYISRELRSGTDYLITVI
AQYPNSLGESVSAKARTKPLLGVTTLRLVQAGFFTLALGWDTPADQVQGYRITYRPTGQT
GAQLKEQSVGADFTSLTLLGLKPDTEYVINLYPLIPRNSASPATLTARTLRLDGVQQLSV
ETISSNSVRVRWTGVTGARGYRVVWGPFTGSDVDTVELRGDSESHTLGNLTPDTEYIVTV
IALYNGEAEGPAATARFKIERSEQQVLRATTTGPTSIRLSWNLIQAARGYRLEWKAGERG
IVQKQDFPQSTTNYELRNLQPSTEYVITLFTLYDGREEATFFSTKSTVEQSVGRVTNLRV
VDSLGNIIRIGWTGVAGATQYNIIILNTESNTEVNRRVPGNQTTFDLRDLIDGLRYAVSV
TALVGSNEGEPATVYIKTEPPLRVTNLRVVGSNSRRVRIAWSGVSGATGYRVTWRQSNTA
EEFRVLGGDITTYTIDGLQPDDSVVVGVAPVIDGQTGEVVSVSTRTSGSTGIVTGLRVVE
ATSTRILITWTPVNRATGYKITWRRSDGVEDSENVRADVASYAIDRLQEAASYQVLVSAL
FNSREGPVATVTARTDQAIVGRVTNLQVLEAQGEVVRVSWVGVQNATSYRILWKRTDGEE
EQSQLVGGNVTSVDLRQLDEGAQYEVKVLALVRNREGPPVSVRVTTGGQRVTRVEGLRVL
DSTPGGLRITWRAVRGASSYQIYWRSSQGEPESSRLISGDATSYTLDGLRPGLSYTVRLS
AVVNSEETEATSIRATTDALPPVNGLSVTDSTENSVLLGWSPVTGATGYILRWTEEEDTG
TGQSETLPGTATSYRVIGLRLGRLYRFTVQPTFQNQVGPETTVEERTVCVGGRLDVVFLV
PASRDRSGLIARVLSLLASTARSFTSIGPRDSQMGVVMYSEDSKVRFLLNRHSNSETLLR
DILSTPFNDRPGNNIGRAMTYARQFLLSTPAGRRSGVPGVVVIIADEKSTDDLSKPAATV
RADGVTVLAVGIGRADPTELRLAVTDGSTQNLIFAQDTNQLYGLHPDLADLLCGLARGTG
VTTGPCTVECPRGAKGEQGQKGERGRDGVDGRKGEPGRDGLSGREGPRGPEGPPGQPGSG
LGVRGEKGERGFPGLDGSPGVPGRSGAVGVPGSQGLPGVRGDPGEPGLVGPLGLKGEKGE
RGESGSAVGGGLPGRKGEPGIPGIPGTPGRPGVVGAKGEAGPRGLSGQDGRPGLSGSPGL
PIKGDKGSPGDRGPPGVGSGVAAKGDAGEPGSPGPSGPQGPRGLTGQKGAKGETGESAEG
KPGPQGNTGDPGDRGPRGPPGEIGTKGDRGQTGAPGSDGATGDRGLSGPAGEKGDKGLAG
PPGPQGLRGLPGSNGLPGEKGTEGAKGEPGSSQGPGSFGRKGERGERGFAGPDGAKGDKG
DAGQKGERGAPGAGEPGQPGSKGDQGDRGLVGLSGKPGAKGSQGDSGERGEAGNPGSQGP
MGPRGKDGLKGDKGEDGISGESGLPGKPGERGLRGITGQSGQPGPKGDTGDPGEDGRNGT
PGPNGPRGQKGEQGIQGPPGPSGDVTSGEKQLKGDRGEKGEAGDPGEHGAKGQKGEGGAS
GPAGPSGSEGQRGLPGARGDPGDRGSPGDKGERGVAGLDGRPGQDGKPSLPGAPGLRGDP
GKQGDPGRDGLPGLRGPQGPSGPPGPPGTDGTPGKAGEDGKPGLLGKAGEDGVPGEDGRK
GDKGEQGAAGRDGRDGIKGDHGIAGLIGPQGPIGPPGVPGNVGPPGPVVYVKGEPATPIP
GPQGPPGTPGVPGVPGVAGARGERGLPGLKGDVGDPGEDGKPGTVADVKRAFSEFGIEIR
ELKLLVDDRSNLISKFSELAEGKRGDKGDVGPRGPAGADGARGVPGERGVKGEHGEKGPP
GPQGPPGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEAGRHGDKGEKGEKGDRGQ
GGPAGLPGLGGPPGPKGDSATAQSGLPGPRGLPGPQGIRGEPGAVGPPGSLGERGYTGAR
GEKGDKGVSGESGKDGSPGSQGDPGKQGQDGKPGLKGLAGPPGLPGNPGEPGIRGPTGPM
GGNGPPGAPGVKGDQGEPGIGVQGPPGPQGNRGLPGPAGTPGAIGPQGPPGLPGQVGEGG
KPGVPGRDGVPGKEGLPGLPGKQGIAGPIGPPGLKGEQGDSGPPGKSVTGPPGMKGETGS
PGQTLPGTIGERGLPGLSGPKGDKGPAGIKGERGAVGDPGDSGENGMRGPQGPKGFKGEA
GVGMAGPPGQLGPIGLKGDPGLPGPLGPPGPRGLDGTPGLAGQRGEAGQPGPPGPQGERG
LQGFIGKTGNPGTSGADGQPGPTGTAGLPGLKGDKGEIGVGVPGPRGERGDLGPRGEEGR
AGTDGERGPTGPSGSKGNRGDKGEQGPSGIKGEKGDTLLVGGPPGENGVKGETGERGPKG
AQGEKGGKGQEGPPGEQGLRGEPGERGSTGFQGARGPGGQKGEAGQPGVPGEAGTPGKDG
LPGMRGEKGEVGHIGLRGLKGERGSKGLCGPSGQKGDKGDSGINGRPGLPGRKGEQGEVG
SQGPTGSPGKEGLIGAKGDRGFDGVLGPKGTQGEKGERGPSGIPGPPGLRGVDGPPGLTG
PQGPAGGKGPEGLQGQKGERGPAGPAMVGPRGIPGIPGERGEQGEIGSDGPKGDRGEPGM
TEDDIRGYVRTEMNLHCACGGKL
NT seq
8892 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtttgctgcaatggactgtgctgcttgctgtgttgctgtctctcccatcgtgt
tctacagctcaaggccagtgcaatgatgttgttgcagcagacattgtattcctggtggat
ggatcatccagtattggcagggccaattttgtgttggtcaagagtttcatggcagggatt
gtccaaccctttgccaaagcagtaggacccaatggcatacgctttggagtcgtacagtac
agcgatactgccagggtggagtttacatttacagcatacctaaatggaactgagctcata
aatgccatagagaatattaactataaaggtgggaatacacgcactggggctggtctcaaa
tacatcgcagacaacttctttaaccctgcctctatcagagatgtacccaagattactgtt
cttattactgatggtaaatctcaggacaatgtgcaggaaccttcacaaaaactacgtagc
ctaggagtcaaaatatttgcagtgggtataaagagtgcagatccaactgagctgaatctc
attgcctctccccctcaaagtgacttcacctctcagattgggaacttcaaagctttgagc
tctttgcttcccctagtgtctcgacgcgtgtgtacaacaagtggaggctcttacttaagt
gatgaggcctacagcggtccatcagacttgcagatttcaggggagaccaccaattcactg
agatttcgatggacatctgcaggagggcctgttagtggctatgtggttcagtacaggccc
ttatctggcttgggtcagccaatcacagcagagctccgacaggaaacaataccaagcaac
cagcagagctacatttcacgagagctgcgttcaggcacagactacctgatcactgtaatt
gctcagtacccaaacagcttgggagagtcagtgtctgccaaggcccgaacaaagcctctc
ctgggtgtgactacactgcgactggtccaggccgggttttttactctggctttgggctgg
gacactccagctgaccaagtacagggctacagaatcacttatagacctacaggccagact
ggtgcacagctgaaagaacaatctgttggagcggactttacttctctgactttgcttggt
cttaagccagacacagaatacgtgatcaacttgtaccctttaattccccgcaacagtgcc
tcaccagctaccctgactgcccgtacattgcgtttagacggagtgcagcagctctccgtt
gagaccatctcaagtaacagtgttcgagtccgctggacaggcgtgacaggggccagagga
tatagagtcgtttggggccctttcacaggaagtgatgtggatactgtagagctgagaggt
gatagtgaatctcacactctggggaatctgacaccagacacagagtacatcgttacagtc
atcgccctgtacaacggagaagctgaaggacctgcagccactgcacgttttaaaatagag
cgctccgagcaacaggtcctgagagctacgacaacaggacccaccagcatcagattaagc
tggaacctcatacaggccgccagaggctaccgactggaatggaaagccggagagagaggc
atagttcagaagcaagatttcccccaaagcaccaccaactatgagctcagaaatctgcag
ccgagcaccgagtacgtcataactctatttacactctacgatgggcgagaggaagctact
ttcttttcaaccaaatcaacagtagagcagtcagtcggtcgtgtcacgaacctgagagtg
gtggattcccttggaaacattatacgaataggatggacaggagtcgctggggcaacgcag
tacaacatcatcatacttaatacggaatcaaacacagaggtgaacagaagagttcctggg
aatcagaccacttttgacctacgggacctcattgacggtttgcgctacgctgtcagtgtg
acggcactagtcggatccaatgaaggggaaccagcaacagtgtacattaaaacagaacca
ccactgagggtgaccaacttgcgggtagttggcagcaacagtcgacgagtcaggattgca
tggagtggtgtttctggggcgacaggttacagggttacctggagacaaagcaatactgca
gaggaattccgtgtcttaggtggcgatatcactacctacactatagatgggctgcagcca
gatgattctgttgttgtgggtgttgctccagtgattgatgggcaaactggagaagtggtc
tctgtgtctactagaaccagtggttctactggaatagtcacagggctacgagtcgttgaa
gcaacatccacaaggatactaataacctggactcctgtgaatagagcaacaggctataaa
atcacctggcggcgtagtgatggagtggaagactctgagaatgtgcgcgctgatgtggct
tcctatgccattgatagactccaggaagctgcatcctaccaagtattagtctccgccctt
tttaattcacgggaaggacctgttgccactgtgactgcaaggacagatcaggccattgtg
ggtcgcgtcaccaatttacaggtgctggaggcccaaggggaggttgttcgagtcagctgg
gttggagttcaaaatgcgacatcatacagaatactctggaagaggacagatggtgaagag
gagcagagtcagctggttggtggtaacgtgacatcagtggatctgaggcaattggatgaa
ggggcacagtacgaggttaaggttttggctctagtccggaacagagagggcccacccgtc
tctgtcagagtcaccacggggggacagagggtgacaagagtagagggtttgcgtgttttg
gattcgaccccaggggggctccgtataacctggagagcagtgagaggagccagctcttat
caaatctattggaggtcttcacaaggtgagcctgaatcaagtcgtctgattagtggtgat
gcaacttcgtatacccttgatggactgcgtcctggtctaagctacactgtaagattgtct
gctgtggttaacagtgaagagactgaagctacctctatcagagcaaccactgatgcccta
ccacccgtgaatggtttgagtgtgacagacagtactgagaattcagtccttttaggctgg
tcaccagtaactggagctacaggctatattttacgctggacagaggaagaggacacagga
acgggtcagtctgaaacgctgcccggaacagccacctcgtaccgtgtgatcggtctacga
ctgggccgtctataccgtttcactgtgcaacccaccttccaaaaccaggttggaccggag
accaccgtggaggaacgaacagtgtgtgttggaggccgtttggatgtggtcttccttgtg
cctgcgtctcgtgatcgctctggcctgatagcacgtgtgttgtctctgttggctagtact
gctagatccttcacctccatcggtcccagagactctcagatgggggtggtgatgtacagt
gaagattcaaaagtgcgcttcctcctcaatcgtcatagcaacagtgagacccttctgcgg
gatattttgtccaccccattcaatgacagaccaggaaataatataggccgggcaatgaca
tacgcgcgtcagtttttgctgagcacgccagcaggtcggaggtctggcgttcctggggtg
gttgttattatcgctgacgagaagtcaaccgatgatcttagcaaacctgctgccactgtt
agagctgatggtgtgacagtgttggcggtaggaattggacgtgcagaccctacagagctg
cgtttggcagtgactgatggcagcactcagaatctgatctttgctcaagacacaaatcag
ctctatggtctccaccccgacctggcagacctcctctgtggccttgcacgggggaccggt
gtcacgacagggccttgtactgtagagtgccccaggggtgctaaaggggaacagggtcag
aagggtgaaagaggcagagatggagtggatggaaggaaaggcgagcctggtcgtgatggt
ttatcgggtcgtgagggccccagaggaccagaggggccaccaggtcaaccaggcagtggt
ctgggagtgagaggagagaaaggcgagagaggttttccaggattggacggcagtccaggt
gttccaggtcgttctggtgcagttggagtaccaggcagtcagggattaccaggtgttaga
ggagaccccggagaaccaggtcttgtggggcctctgggattgaagggagagaaaggtgaa
aggggggaatctggatctgctgttggaggaggtttaccaggccgtaaaggagagccagga
atcccagggatccctggcactcctggtcgtccaggtgtggttggggcaaaaggagaggca
ggcccacgaggtctgtctggacaggatggtcgccctgggttgtcaggctctccagggctt
cctattaagggtgacaaaggcagccctggagacaggggtcctcccggagtgggcagtggg
gttgctgctaaaggagatgccggtgaacccggaagtcctggaccgtctggtccacagggc
ccacgaggactgactggacaaaaaggagctaaaggagaaactggtgagagtgctgagggt
aaaccaggcccccaaggaaacaccggagaccctggtgatcggggtccccggggacctccg
ggtgaaatcggaactaagggtgaccgaggacagactggagctcctggttcagatggagcc
acgggtgaccgaggactttcaggtccagcaggagaaaagggagataaaggtttagcaggc
ccccctggacctcaaggactgaggggtttgccagggagcaatggccttcctggagagaag
ggcaccgagggtgcaaaaggggaaccaggaagcagtcagggtccaggttcatttgggaga
aaaggagagcggggtgaaaggggctttgcaggtcctgatggtgctaaaggtgataaagga
gatgcaggacaaaaaggggaaaggggtgcccctggagcaggagagcccggccaacccgga
tctaaaggggaccagggcgatcggggtctcgttggattgtctggaaaacctggtgcaaag
ggcagtcaaggtgactcaggggagagaggggaggcaggcaatcctggttcacaggggccc
atgggccccagagggaaagatggactaaaaggagacaaaggagaggatggtatttcagga
gaatcagggttgccaggtaaaccaggggagagaggtctaagaggaataacaggtcaatca
ggtcaacctgggccaaaaggagacacgggtgatccgggggaagatggacgaaatggtacc
ccaggccccaacggaccaagaggccaaaagggcgagcagggaatacaaggtccccctggg
ccgtctggagatgtgacatctggagagaaacagctgaaaggtgacagaggagaaaaggga
gaggcaggtgacccaggggagcatggggctaaaggtcaaaagggtgaaggaggagcttca
ggccctgcaggaccaagcggttctgaggggcagcgtggtctaccaggagccagaggtgac
ccaggtgataggggcagtccaggagacaagggagaaagaggagtggctggattggatgga
cgacccggtcaggatgggaaacctagtcttcctggagctcccggattacggggtgaccca
ggaaaacaaggggatcctggacgagatggattgccaggactaagagggcctcaggggcct
tcgggaccacctggtcccccaggaactgatggcacacctggtaaagcaggggaggatggg
aaaccaggactgcttggaaaagctggcgaggacggcgtgccaggagaggatggtcgaaag
ggagacaaaggagagcagggggccgctggaagagacggtcgagatgggataaaaggtgat
cacggcattgcaggacttattggcccgcaaggtcccattggaccccctggagttcctgga
aacgtcggaccaccaggacctgtggtctatgttaaaggggagccggcaacgcctattcca
gggccccagggccctccaggaacccctggagtacctggagttcccggagttgctggagca
agaggggaaagaggtctaccaggcttgaaaggagatgtgggtgatccaggagaggatggc
aaaccaggaactgtagcagatgtgaagagagcgttctcagaatttggcattgagatcaga
gaactaaaactattagttgatgaccgaagcaatctgatatcaaagttcagtgaactggct
gagggaaagaggggcgataaaggagatgtcggacctagaggccctgcaggtgcagatggt
gcacgaggtgttccaggtgagcgaggtgtgaaaggagagcatggtgagaaagggccgcct
ggcccacagggtcctccaggcagggcaattggagagagaggcccagagggtccgccagga
caggcaggtgaacccggaaagccaggaataccaggagtaccaggacgagccggtgaactt
ggagaagctggcagacatggggacaagggagagaaaggggagaaaggggacagagggcaa
ggtggtccggctggattgcctggcctaggagggcctccaggaccaaagggcgattctgcc
accgctcagagtggtttgcctggtccaaggggtctgccaggcccccaaggtatcagaggt
gagcctggtgcagtagggcctccaggatctctgggagagcggggctacacaggtgctcgt
ggggagaaaggggacaaaggagtcagtggagagagtggaaaagatggctccccgggaagt
caaggagatccaggaaaacaaggacaggatgggaaaccgggtttgaagggactggccggt
ccaccaggcctacctgggaatccaggagaaccaggaataagaggaccaactggtccgatg
ggtggaaatggacccccaggggctcctggtgtgaagggtgaccaaggagaaccaggcatt
ggagttcaaggccctcctggacctcagggcaacagagggttacctggacctgcaggcact
ccaggagccatagggccacaaggacccccagggcttccaggacaagtgggagaggggggc
aagcctggggtcccagggagagatggtgttccagggaaagagggcctgccaggattacct
gggaaacaaggtattgctggacccatcggccccccaggacttaaaggagagcaaggagac
agcggtccaccaggaaagtctgtcaccggaccccctggaatgaagggtgagacgggatct
cctggtcagacattgccaggcactattggagaaagaggccttcctggattatcaggtcca
aaaggagacaaggggccagcggggataaaaggagaaagaggtgctgtgggtgatcctgga
gattctggggaaaatggaatgagaggcccacaagggcccaaaggattcaaaggtgaggca
ggcgtggggatggctgggcctcctggacaacttggacccatcggcttaaagggtgaccct
ggcttgccaggtcctctaggccctcctggaccacgtggattggatgggacaccaggactg
gcaggacagagaggtgaagcaggtcagccaggaccccctggaccacaaggagagaggggt
ctacaaggatttataggcaaaacaggaaacccaggaacatctggagctgatggacaacca
ggacccactggtactgcaggccttccaggactcaagggcgataagggtgaaattggagta
ggagtgccaggtccaagaggagagcgaggagacctcgggcctcggggagaagaaggtcgg
gctggaacagatggagagagaggccctactggtccttctggcagcaaagggaacagagga
gataagggcgagcaaggtccttcgggaattaaaggcgaaaagggagatactctgctggtg
ggggggcctccaggagagaatggagtgaaaggagaaactggggagcgaggacctaaaggt
gcacagggtgaaaagggtggaaaaggacaggaaggaccaccaggagaacagggtctgaga
ggtgagccaggagagagaggttccactggtttccaaggagcccgtggtcctggtggtcag
aagggagaagcagggcagccaggtgtcccaggtgaagcgggaacacctggtaaagatggc
ctgcctggcatgagaggagagaagggagaggttgggcacataggtctccgaggcctcaag
ggagaacgaggctccaaggggctatgtggaccaagcggacaaaagggagacaagggagat
tctgggattaatggcagaccaggattgccggggaggaaaggagagcagggtgaagtcggg
tctcaaggtcccacaggaagtccagggaaggaggggctcattggcgccaagggtgacaga
ggctttgatggagttttggggccaaagggaacacagggagagaaaggtgaacggggccca
tctggtatcccaggccctcctggtctgagaggtgtggatggaccccccggtctaacaggc
cctcaaggacctgctggaggtaaaggtccagagggtctgcagggacaaaagggagaaaga
ggtcctgcaggccctgctatggttggtccacgtggcataccagggatcccaggagagaga
ggagaacagggtgagataggctctgatggacctaaaggagacagaggagaaccaggcatg
acggaggatgatattcggggttatgttcgaactgagatgaacctgcattgtgcttgtgga
ggtaagttgtga
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