Rhinichthys klamathensis goyatoka (western speckled dace): 130087539
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Entry
130087539 CDS
T09701
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130087539 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130087539 (smarcc2)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130087539 (smarcc2)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130087539 (smarcc2)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130087539 (smarcc2)
PBAF complex
130087539 (smarcc2)
GBAF(ncBAF) complex
130087539 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
PaaA2
Motif
Other DBs
NCBI-GeneID:
130087539
NCBI-ProteinID:
XP_056109852
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPTAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPRRKRISAKTLTDEVSTPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKELDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSQSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKASQTSSSQQMLSFPDKVKDKPADLQNFGLRTDVYSKKSGPVKNKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEESSASLGPLAYQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RASGRSDPLYGLEGSGIAGTGLEDSDKPAEDGNEENKSSDGQSSQDKKDNKESKDGPSEE
EEKQGENGKKEEERVREGETDRETEKTDSEMADGEKEKERKEGSEEGQRDGESEGEKKAK
VERDVGEGNLSTAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQSG
STPSVPHQPVTPSVPPPTASPAPVPASNAHSEAPPPASHSSPPTNAQAGAAHDSSTPLPG
DSLYPNAPVPPPQ
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtccgatacc
gtctcgcagttcgacaatgtccgggtttggctgggcaagaattataaaaagtatattcaa
gcagagccccccaccaataaatctttgtcgagtctggtggttcaactgcttcagtttcag
gaggaagtgtttggccgacatgtcagcaaccctccccttactaaactaccgatgaagtgt
tttttggatttcaagtctggaggagccctgtgtcatattctggctgctgcctacaagttt
aagagtgatcaaggatggaggagatttgacttccagaacccttcgagaatggaccgcaat
gttgaaatgttcatgactatagagaaatctttggtacagaataactgtttgtcccgacct
gtgatttacctgagttcagagatagagcccaaactactgggaaaactgaaggacatcatt
aaacgacaccaggggtctgtgactgaagataagctttctagctctcatgtagtggtgcct
attcctgctagtctggaggacgaagagtgggtccgtcctgtaatgaagagagacaaacag
atgctgctacactggggctactggccggatagttatgacacatggatctcagccagtgag
gtggaggctgctgtggaggatccgcccactgctgagaagcccaggaaggttcatgccaag
tggattctggacctggatcagtttaatgagtggatgaatgaggaagactatgaggtggga
gagggaggaccgaggaggaagaggatttcagcgaagactctcacagatgaagtgagcact
ccagatgaaaggagggataaaaaacccagcagtgccaaaaagaggaagcgctccccgtct
ccatctcctacccctccaccgcaggagagcaagaagaaaaacaccaagaaagggcccact
acaccctacactaagtccaaaagaggacagagagaggaagaacaggaagatctgactaaa
gagttagatgaaccctcacctgtgcctgcagtggaggaagctacactacctaaaacagtg
actaagaaggattcagattctactccagtgaaaggaggcactatgactgacctggatgag
caagaggatgaatcaatggagactgttggaaaggaggaagaagaaggttcccagagtgtg
aaaggagaaccggtgaagggatcggatcttcatgaggataatgtcactgaacagacccat
catatcattatccctagctatgctgcttggtttgactataacagtgtccatgctatagag
cgcagagcactgcctgagtttttcaatgggaagaacaagtcgaagactcctgaaatttat
ctggcataccgtaacttcatgatcgacacgtacagactgaacccacaagagtatttgacc
tccacagcttgccgtagaaacctggctggagatgtttgtgccattatgagagtccatgcg
tttctggaacagtggggcttgattaactatcaggtggattcagaaagtcggcccactccc
atggggcctccacccacctcacactttcacgtactggcagatactccatcaagtctggta
ccactacagcctaaagcatcccagacttcatcttctcaacagatgctctcattccctgac
aaagtgaaggacaaacctgccgacttacagaactttgggttgaggacagatgtgtacagt
aagaagagtggtccagttaaaaataaaaatgctgccagtgccactcgggaatggacggac
caggagacgttgctactgctggagggtctagagatgtataaagatgactggaataaagta
tcggagcacgtgggcagccgcacacaggatgagtgcattctccacttcctgcgtctaccg
attgaagatccctacctggaggaaagctccgcctccctgggcccgctagcctatcagccg
gttccgttcagtcaagcgggcaaccctgtcatgagcactgtggcgttcctggcctctgtg
gttgaccctcgagtggcttcagctgcagctaaatctgcgcttgaggagttctctcgaatg
aaggaggaggtaccagctgcattggtggaggctcatgtgcgtcgagtggaggaggcggcc
agagcaagcggaaggtcagaccctctctacggcctggagggcagcggcatcgcaggaact
ggtcttgaagactctgacaaacccgcggaggatggaaatgaggagaataaaagcagtgat
ggtcaatccagccaagataagaaagacaataaggagagcaaagatggacccagtgaggag
gaagaaaagcaaggagagaacggcaagaaagaggaagagagagtgagagaaggggagaca
gacagagagacggagaaaacagactcagaaatggccgatggcgagaaggagaaagaacgg
aaggagggatccgaagagggtcagagggatggagagagtgagggagagaagaaggcaaag
gtggagagagatgtaggagagggaaacctgtccactgctgctgcttcggcgcttgctgct
gctgccgtgaaagctaagcacttggctgcggtggaggagaggaagatcaagtctctggtg
gctctgctggtggagacccagatgaagaaactggagatcaaactcagacactttgaagag
ttggagaccatcatggacagagagagagaggcgttggagtatcagaggcagcagcttctt
gctgatcgtcagtcgtttcatatggagcagttgaagtatgcagagatgagagccagacag
caacacttccagcagatccaacaccagcatcatagcaaccagcctggcaaccagtctggc
agtactccatctgtaccccaccaacctgtcactccatctgtcccgcccccaacggcaagc
cccgcccctgtgcccgcctctaatgcccacagtgaagctcctccacctgcctctcacagt
tctcccccgaccaacgcacaggctggagcagcacacgattccagcactccactaccaggg
gattctctctatccaaacgcccctgtgcctccaccacagtaa
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