Rhinichthys klamathensis goyatoka (western speckled dace): 130087621
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Entry
130087621 CDS
T09701
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130087621 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130087621 (sf3b3)
03041 Spliceosome [BR:
rkg03041
]
130087621 (sf3b3)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130087621 (sf3b3)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130087621 (sf3b3)
Spliceosome [BR:
rkg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130087621 (sf3b3)
Complex B
130087621 (sf3b3)
Complex C
U2 SnRNP specific factors
130087621 (sf3b3)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130087621 (sf3b3)
TFTC complex
130087621 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
130087621
NCBI-ProteinID:
XP_056110005
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VIRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRMINPIQGNTLDLVQLEQNEAAFSVAVCRFSGGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLAGGGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMAAADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVINYHIGETLLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgaccctgcagcgggcaactggcatctcccatgccatccatggc
aacttctcaggaactaagcagcaggagattgttgtttcccgtgggaaaatcctggaactg
ctgcgtcctgatgccaacacagggaaggtccacacgctgcttactatggaggtgtttggt
gtcatccgatccctcatggccttcaggctaacgggtggaactaaagactatgttgtggtg
gggagtgactctggccgtattgtgattctggagtaccatccctccaagaacatgtttgaa
aagatacaccaggagacgtttggtaagagtggctgcagacgtatcgtgccagggcagttc
ctcgctgtggacccaaaaggcagagctgttatgataggtgccacagaaaagcagaagttg
gtatacatcctgaacagagatgcagccgcccgccttaccatctcctcccctctagaggcc
cataaggctaatacacttgtctaccatgtggttggtgtggacgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaggcagataatgatcccaccggagaagct
gcggcaaacacacagcagactctgaccttttatgagttggacttgggcctcaaccatgtc
gtgcgcaagtacagtgaggcactggaagaacacggcaacttcctcatcacagttccggga
ggttcggatggtcccagcggtgtgctcatttgctctgagaactatatcacctacaaaaac
tttggtgaccagccggacatccgttgcccaatcccacgcaggaggaatgacctggacgat
cctgagaggggcatgatctttgtctgctctgccacccacaagaccaaatccatgtttttc
tttctagcccagacagaacagggtgacatcttcaaggttacactggaaactgatgaggag
atggtgaccgagatcaggatgaagtatttcgataccattccagtggccacagccatgtgt
gttttgaagactggcttcttgtttgtttcttcagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgatgacgaggaacctgagttttcttctgctatgcctctggag
gaaggagacacattcttttttcaaccacgtccccttaagaaccttgtgctagtggacgag
caagaaaatctttcccccatcatgtcctgccagattgctgatttggctaatgaagatacc
ccgcagctgtatgtggcatgtggcagaggaccccgatctacactgagagttttgagacat
ggactggaggtgtcagaaatggcggtttctgaacttcctggtaaccccaatgctgtgtgg
actgtcaggagacatgtagaagatgagtttgatgcctacatcattgtgtctttcgttaat
gccaccctggtgctttctattggcgagactgtggaagaagtgacagactctggcttcttg
ggcacaacacctaccctgtcctgctcgttgcttggggaagatgcacttgtgcaagtctat
cccgatgggatccgtcacatccgtgcggataagagagtgaacgaatggaagactccaggg
aagaagacaatcgtccgatgtgctgtcaatcagaggcaggtggtcattgctttgaccgga
ggagaactggtctactttgagatggacccgtctgggcagctaaatgaatacaccgaaagg
aaggagatgtctgcagatgtggtgtgcatgagtttggcaaatgtgccacctggtgaacag
cgttctcgtttcctggccgttggattagtggacaatactgttcgtatcatctccttggat
ccatctgactgtctgcagccattgagtatgcaggctcttcccgcccagccggagtctctt
tgtattgtggagatgggtggagtggaaaaacaagatgaactaggagaaaaaggcaccatc
ggcttcctatacctcaacattggcctgcagaacggagtgttactgcgtactgttttggat
ccagtgaccggggacctgtctgatactcgaactcggtatctcggctctcgtcctgtcaag
cttttcagagtccggatgcagggccaagaagctgttctggccatgtctagtcgttcctgg
ctgagttactcataccagtctcgtttccacctgacccccctgtcatatgaaaccttagag
tatgcatcaggcttcgcttctgaacagtgtcctgagggtattgttgccatttccaccaac
acactgagaattttagctcttgagaaactgggtgccgtcttcaaccaggtggcattccca
ctgcagtatacacctcgcaaatttgtcatccacccagaaacgaacaacctgatcctgatt
gagacagaccacaatgcctacactgaagccaccaaagcccaacgcaagcagcagatggct
gaggaaatggtggaggcagcgggggaagatgaaagagagctggctgcagaaatggcagca
gctttcttgaatgagaacctgccagaagccatctttggggcacctaaagcaggttctggg
cagtgggcttctctagtacgcatgatcaaccccatccagggcaatacactggacctggtg
cagctggagcagaacgaggcagctttcagtgtggccgtatgtcgcttttccggtggaggc
gatgactggtatgtgttagtgggcgttgccagagatatgatactaaatccgcgctccgtt
ggtggaggatatatttatacctatcggctagctggaggtggggacaagctggagtttttg
cacaagacacctgtggaggacgtacccctggctatcgctccctttcagggacgagtgttg
gttggagtaggcaaactcttgcgcatctatgacttgggaaagaagaaacttctccgcaag
tgtgaaaataagcatgttcctaacttggtgacgggcatccacactattgggcagcgtgtg
attgtgtctgatgttcaggagagtctattctgggtgcgctacagacgcaacgagaaccag
ctcatcatctttgctgacgatacatatcctcgctgggtcacaaccgcctgcctcctcgat
tatgacaccatggctgccgcggataagtttggaaatatctgtgttgttcgcctgcccccc
aataccagcgatgatgttgatgaggaccccacagggaacaaggcattgtgggacagaggc
ttgcttaatggagcatcacaaaaggctgaggtggttattaactatcacataggagagact
ttgctgtccctccagaaaaccaccctcatccctggaggatcagagtccctggtgtacacc
acgctatcgggaggcattggcatcctggtgccgttcacctctcacgaggatcatgacttc
ttccagcacttggagatgcacatgcgctctgagtttccccctctgtgtggtcgtgatcac
ctcagcttccgctcatattatttcccagtgaagaatgtgatcgatggagacctgtgtgag
cagtttaactccatggacccccataagcagaagagtgtctctgaggagttggaccgcact
cctccggaggtgtcgaagaaactggaagacatcagaacacgctatgccttctag
DBGET
integrated database retrieval system
