Rhinichthys klamathensis goyatoka (western speckled dace): 130087713
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Entry
130087713 CDS
T09701
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130087713 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130087713 (topbp1)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130087713 (topbp1)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
130087713 (topbp1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
130087713 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
130087713
NCBI-ProteinID:
XP_056110158
LinkDB
All DBs
Position
Unknown
AA seq
1550 aa
AA seq
DB search
MSKGSRDAYIVKFVERNGQKTDLALQAYKAIVELQSEKYVQTVDEEAALELDHNDKSLFV
FSDFTSNSFDHCRRLGCRIVSPLVVLFCLQKQRCVPKAEQPVYNMAMADITISCTNLDKE
ARSEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPSWVKACWEKS
QDSVFHHSELNTEDYRCPVLKGCTVCVTGLSTVERKEVQRLCGQNGGSYTGQLKMNECTH
LIVNEPTGQKYEFARKWNVYCVSLHWLFDSIEKGFCQDESRYVMGRGEKKRTEEKAGRPN
TSTPTGGSRSKEDGPSLLGLSHISNISMNVNETALTTAGISHIETPDPVDSFDITVCRVD
DLLDGCKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQELTHIVMGEPDQRVKVFLDKAT
HRPPIVTVEWLLDSFSHGTLLPEDSYFHPSFLPPAPAAVDLPAAQKTAPRASRPSVAPPP
APSPARQARAEEDLLSQYMETDQTVVELAQATKSTRSRQSVLLPEPPAARKDSTLVETSE
GALFSGKRFILVGFGAEAEAQLSELVMENAGKILVGRSRAVAHYAIVPLLGCDVEATVDE
VVTDTWLAMCLEQQCVLPLASHPLFTPVTVKEGFSPLKDCVLSVSQFTGAERDSLIQLAK
HLGASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGFPAVTIRWVLESARTGK
RADEGRYLVSLPPSPERSEDSFVGASQKDPPPVRLLQRSPELPLLGPQNSAAITPLDTTR
FQSRTVRSAVRKLREGEEEQAEVSTPGQEDAKGALQKDSSLQLDTPSRFLSRDRLFGPSF
NTKDVFDHLQTPGNNPQQGQGVETPLSEVIERNLNAAVANSNRSHVTNLAAITASPQLEK
KEPEPEVEQKTAAPLRGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHFIYQGK
VGDNSKEYRAVKERGLHIVSQHWLQACADEQKHVSESLYPFTFNPKMSLTMSQMADCTQR
SPPPTTPRTRLRAFTESEETGLGPNDDITDISTPQRVSVGEPEKDQTLSNERKSITEALE
MRENLQRQLQEIMSATKLTSGRRGSSRLARTGSGGQGSPHTPDSLGRMGRRSRNLEAIRM
SRQVDVDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLALVPLPPSDHA
ANGRDSMTDSELVEMAAFEVIDAQLRPKVTPPRVATLQKPETPEAPSIAFPISKTAAAPL
PPIEDEDEVKKDPPRFLLSSLNPQERIDYSHLIEELDGVVLEKQSFDPSCTHVVVGYPLR
NEKYLAAMAAGKWILHRSYLEACRAEGHFIKEEQYEWGSSSILDALPSINSQQKRLALAA
MRWRKTLHGVSNKEVHIYMYIHLAWMNLQVHGAVPDAVDVQGAFGGWTVMLNIDQAREAG
FRRLLQSGGAKVLPDPSPSLFQETTHLFVDFSRLKPGDVRVDISEAAAQGVKCLKPEYIA
DYLMQEPSPSMDAYYLPGAAADDLEKVQDTSSRKRKASGEMSTLKKSRVR
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggcagcagggatgcatatattgtgaaatttgttgagcgcaatggacagaag
actgatctggctctacaggcctataaggcaatagtggaacttcagtcagagaagtatgtg
cagacggtggacgaggaagccgcactagagctggaccacaatgacaaatccctgtttgtg
ttcagtgatttcaccagcaattcctttgaccactgcaggaggctgggatgcaggatcgtg
agtcctcttgtagtgctgttctgtctgcagaagcagagatgtgttcccaaagcagagcag
cctgtttacaacatggcaatggctgatatcactatctcctgcaccaatctcgacaaagag
gcacggagtgaagtgatggatcttgtccagctgatgggtggacgggtttaccgtgatctc
aacgtgtctgttactcacctggtggcaggtgaagtggggagtaagaaatacctggtggcc
gcaagcctcgggaagcccatcctattgcccagctgggtgaaagcatgctgggaaaagtct
caggatagtgttttccatcactctgagctgaatacagaagactatcggtgtccagttctt
aaaggctgtacagtgtgtgtgacgggactctctactgtggagcgtaaagaggttcagagg
ttgtgcggtcagaatggaggaagctacacggggcagctcaagatgaatgagtgcactcat
ctcattgtcaatgaacccacaggtcagaaatatgagtttgcccgtaaatggaacgtatac
tgtgtgtccctgcactggctgtttgacagcatcgagaagggcttctgtcaggatgagagc
aggtatgtcatggggcgtggagagaagaagagaaccgaggagaaggcgggcagacccaac
acgtccactcctacaggaggcagcaggagcaaagaggacggtccctcacttctgggattg
agtcatatatccaatatcagcatgaatgtaaatgaaacggccctcaccactgcaggaatc
agccacatagagactcctgatccggtcgactcatttgacatcactgtctgtcgagtagat
gacctgttggatggctgtaagttgtacctgtgtggcctttccggaaagaaactggagaaa
ctgaggcggatggtgaactctgctggaggtctgcgctttaaccagcccagccaggagctc
acgcacatagtgatgggagaaccagaccagagggtcaaagtcttccttgacaaagccact
cacagacctcctatagtgaccgtggaatggctgctggacagtttctcccatggtactctg
ctcccagaggatagctactttcacccctccttcctgccccctgccccagccgctgttgat
ttgccagctgctcaaaaaactgctccccgtgcctccagaccctctgtagctccccctcct
gcccctagtccagcccgtcaagccagagcagaagaagacctgctctcgcagtacatggag
actgaccagactgttgtggagctggctcaggccactaagagtacacggagtcggcagagc
gttttgcttccagagcctccagctgcacggaaggactcaaccttggttgaaacctcagag
ggtgccctgttttcagggaagcgcttcatcttggttggttttggagctgaggctgaagcc
cagctctcagagctagtcatggaaaacgctgggaagattttggtgggccgctcgagagca
gtggcgcattacgccatagtgccactgctgggctgtgacgtggaggccacagtagatgag
gtcgtaacagatacctggctggccatgtgtttggagcagcagtgtgtgttgccgttagcc
tctcatcctctattcactccagtgacagtgaaagagggcttctctcctcttaaagactgt
gtgctgtccgtcagtcagtttactggagctgagagagactctctcattcagcttgccaaa
cacctgggagcaagtgttcaggattactttgtgcggaccgctaatcaaaggaagggaatg
cttgccagcactcatctggtactccagacacctgagggcaccaagtaccaggcagcccag
aaatggggtttccctgcagtcacgatccgctgggttttagagtctgccagaacagggaag
cgtgccgatgagggacgatacctggtttccctgccaccctctccagagagaagtgaagac
agttttgttggagcatctcagaaagacccgccgcctgtgcgcctcctgcaacgctcccca
gagcttcccctactgggcccacaaaacagtgctgccatcacccccctggacacgactcgc
tttcagagccgcactgtccgttcagcagtcaggaagttgagagaaggagaggaggagcag
gcggaggtgtcaaccccaggacaagaggacgccaaaggagccctgcaaaaagactcctcc
ctccaactagacactccctctcgctttctgagcagagaccgactcttcggaccctcattt
aacactaaggatgtctttgaccatttacagactccgggtaataacccacagcaaggtcag
ggggtggagactcctctgtcagaggtcatcgagaggaaccttaatgctgcagttgccaac
agtaaccgcagtcatgtcacaaacctcgcagccataactgccagtccacaactggaaaaa
aaagagcctgaacctgaggtggagcagaagactgcagctcctctcaggggggtggtggtg
tgtgtgagcaagaaattaagcaagaaacagagtgagctcaatgcagtggccgcctctctc
ggtgcagacttcaggtggtcgtgtgacgactctgtcactcatttcatctaccaggggaaa
gttggagacaacagtaaagaatacagagctgtcaaagagagaggactgcatatagtgtca
caacactggctacaggcttgtgcagatgagcagaagcatgtgtcggagtcgctctaccct
ttcactttcaaccccaaaatgagccttaccatgagtcagatggcagattgcactcagagg
tcacctccccctaccaccccccgcaccagactcagggcgttcacagagagtgaggagacc
gggcttggccctaatgacgacataacagacatctcaactcctcagcgagtcagtgtggga
gagcctgagaaagatcagaccctcagcaatgagagaaaaagtattacagaagcgctggaa
atgagagagaatcttcaaaggcagcttcaggagatcatgtctgccactaaactgaccagc
ggtcgtcgaggctcctcacggttggccagaacaggctccgggggtcagggctcaccccac
accccggacagcctggggcgaatgggtagacggagccgcaatttagaggccatacggatg
tcacgtcaagtggatgtggacctgaacaccgagccgtctcagagtgagcagatcgtgtgg
gatgatcccacagcacgagaggagagagctaaactggccgataacctgcagtggcctgga
agcccctcccagcactccgaacctctagccctcgtcccgctgcccccctctgaccacgcg
gccaatggcagggactccatgactgactctgaactggtggaaatggccgcatttgaagtc
attgatgcacaactgaggccaaaggtgaccccgcctcgagtcgccacgctacaaaagcct
gaaacacctgaagctcctagtattgctttccccatttctaaaactgcagccgctcccctt
ccaccgattgaagatgaggacgaggtgaagaaggatcctccacgattcctgctgtcttca
ttgaatccgcaggaacgcattgactacagccatctcatagaggagctagatggtgttgtg
ctggagaagcagagttttgaccccagctgcactcacgtggttgtgggttatcctctgcgc
aatgaaaagtatctggccgcaatggcagcgggcaagtggatccttcaccgctcatacctg
gaggcctgccgtgcagaaggacacttcataaaggaggagcagtatgagtggggcagcagc
tctatactggacgctctgccgtccatcaactctcagcagaagagactggcactggcagcc
atgcgatggaggaagactctacatggcgtctcaaacaaggaggtacacatatatatgtat
atacacttggcatggatgaacctgcaagtacatggtgcagtgcctgatgctgttgatgtg
cagggagcttttggcggctggactgtaatgctgaatattgaccaggccagagaagctgga
ttcagacgcctgctgcagtctgggggagccaaggtgttaccagacccttctccctcgctg
tttcaagagaccacacacctgtttgtggattttagtcggttaaagccgggtgatgtcaga
gtggacatcagtgaggctgcagctcagggggtcaaatgcctaaaaccagaatatattgct
gattacctcatgcaggagccatctccttcaatggatgcttactatcttcctggtgcagct
gcagatgatctagagaaggttcaagatacatcttcacgcaaacggaaagcatctggcgag
atgtccacattgaagaagagtcgtgtgagatga
DBGET
integrated database retrieval system
