Rhinichthys klamathensis goyatoka (western speckled dace): 130087841
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Entry
130087841 CDS
T09701
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130087841 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130087841 (vps8)
Membrane trafficking [BR:
rkg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130087841 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Beta-prop_WDR5
zf-RING_UBOX
zf-RING_11
Beta-prop_WDR3_1st
Beta-prop_THOC3
WDR55
ANAPC4_WD40
PHD_4
Beta-prop_HPS5
EIF3I
Beta-prop_EML_2
zf-C3HC4
UBA_HOIP
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
130087841
NCBI-ProteinID:
XP_056110302
LinkDB
All DBs
Position
Unknown
AA seq
1412 aa
AA seq
DB search
MAESPDSRSLVSASSQLNLMEIEAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRRRKAVETNATVHGSVLRRSVLKGISAQIV
SAADKVDAGLPTAITVSNVIAVGTSHGLALVFDQNQALRLCLGTTATGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDHPALAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGPELKDHPITQYSLLAMASLTKILL
IGLKPSLKVWMTFPYGKTDPTSVPLLAWQFVAVQKAINPVLAFCRGDTIHFLLVKKDESG
TIHVIKQRQLQLNCDLINLSWINPRTLVLMDSTEKLRVVDRPSQEELETVDMAELQLVYN
SSHFKSLATGGNVSQALALVGEKTCYQSVCSNAGQIMYLGTKSVHIMTLRNWRERVDHLL
KQEKFMEALSLAWSFHEGTAKAVLGLFADPAKRKGGVADKMVEMLLQYVDRSLKKCPEQG
KIQVMEQHFQDMVPVMVDYCLLLQRTDLLFNQIYPRLVENSVARGVFLESLEPYILSERI
GCLTAPVMRDLLSYFQENGMMDSVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMIYVFNS
GMNDYISPMEKLFQAIGPHLQEGKPLTDEHVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
PQVKNQVFEFLIRLHSVEAAQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALEY
QQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDD
DSRHTERQQVLLELLQVGGVVQFDEGRLLELAEKAEFYQICEFMYENKHLYDKIFDCYLK
DPLRKEELFNYIHNILSMPGYSSEEKHLVWVKGLQHIKDLVSLNSAKTAELVAVHFTDEV
QSIITSLQDDYLVFQFLKCLLDPSSREGLNLQTVLRLGSDLHELLVDLLCQFSPQHVIAF
LKTSQDYRLEEAIQITEKHKLHEATAFLLERKGDVQGAFEVLLQTLKGKLHKLALKGSEA
DKPDDEEEETGNEVQSLLQIVDEALHDIITLCQRSSHGLNQQQREALWFPLLEAMMSPQK
LLKGADAKHTSDALKELTMKVLNSMSSFIAPPAIIQRILQDPVYGKGKLAEIQGLILGML
ETFNYEQTLLETTTNLLNSDLHWSLSHLRKAVSRGLHPRQDHCNICLQQYKRRQESEEEI
IIFSCGHLYHCQCLQRKEAGVLSERQYSWSCYKCTSNQGSRPADRPSAESSRSRSASLAQ
TKVTSAHRGNVADAHGRKMLTEATLDAQQTLAWDQFRTIYRGPSRLAVLTELTHSHGNER
SGLSNPAPPGTGSIYHSENFQLKLSPPPLVEE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatctcccgacagtcgcagtcttgtttctgcgtcctcacagctcaatttaatg
gaaatagaggcgattgatgataaagagtttgacatccctcaagtggacactcctccgacc
ctggagagcattctgaatgagcctgaagatgaggacgagccatttattctagaggatacg
tgtcttttgaacacagagaacattgatgcccactcctgtgagacctcttctctggccagc
tctgacagtggagaccgcacacacttaaagaggaggaggaaagcagtggaaactaacgct
acagtacatggatctgttcttagacgcagtgtgctgaaaggcatctcagcccagatagta
tctgctgcggataaagttgatgctggcttgccaactgcaataactgtttcaaatgtgatt
gctgtagggacgtcacatggtctggccttagtatttgatcagaaccaggctctgcgactc
tgcctgggtaccacagcgacaggagcggagtacggtgcggtgtcagctctcagtataaat
cacgactgcacacgactactgtgtggttttgccaaaggacagatcaccatgtgggatctg
gccaatgggaagctgctccgcactatcacagacgcccatccacccggcactgccatacta
catgtgaagttcactgaccacccggcgctagctgtatgtaatgacagtggcggatcagtg
tttgagctgtcattcaggagggtaatgggaatgaggacgtgtgaatccaggtgtttattc
agtggttctaaaggtgaggtttgctgtgttgagcctctacatgctggacctgaactgaaa
gatcatcccattacccagtactcccttctggccatggcatcactcactaagattctgctg
ataggactgaagccttcactcaaagtgtggatgacttttccctacggcaagacggatcct
acgagcgttcccttgttggcgtggcagtttgtggcagtacagaaagcaatcaaccctgtt
ctagccttctgtagaggagacaccatccacttccttctggttaaaaaagatgagtctggc
accatccatgtcatcaaacagagacagctccaactcaactgtgacctcatcaatctgagc
tggataaacccccgcacgcttgtgttaatggacagcacagagaagctgcgagtggtggat
cggcccagtcaggaggagctggaaacagtggacatggctgagctgcagctggtttacaac
agcagccattttaaatccctcgctaccggtggaaatgtcagccaagcactggcactagtt
ggagagaagacatgttaccagtctgtttgcagcaatgcagggcagattatgtatctggga
acaaagtctgtgcatatcatgaccctgaggaactggcgagagcgtgtggaccatctgttg
aagcaggagaagttcatggaggctctgtctctggcctggtccttccacgagggcaccgcc
aaagctgtgttaggtctatttgcagaccctgctaagagaaaaggtggggttgcggacaag
atggtggaaatgttgttacaatatgtggatcgctctctgaaaaagtgtccagagcaaggg
aaaatccaagtgatggagcagcacttccaggacatggttcctgttatggtggattattgt
ctccttctacagaggacggacctactgtttaaccaaatctaccctcggttggtggaaaac
tcagtggccaggggtgtgtttctggagagtctggagccctacattctgagcgagcggatt
ggctgtctgactgcacctgtcatgagagacctcctcagctacttccaggagaacggcatg
atggatagtgtggagggatgcctggtccacatggacatcactaacctggacatacaacag
gtggtgcagatgtgctgggataaccagctgtatgacgccatgatctacgtctttaacagt
ggcatgaatgactacatcagccccatggagaaactctttcaggcaattggtcctcatctg
caagaaggaaagcctctcacagatgaacatgttgtgatgggaaataaactgctggtgtac
atcagctgttgtttggcaggacgtgcctatccattaggtgacattcctgaagatctggtg
cctcaggtgaaaaaccaggtgtttgagttcctcattcgtctgcactcggtggaggctgca
caggaagaggaagtgtatccctacatccgaactctcctgcacttcgacactcgagagttc
ctcaatgtcctggcgctgacatttgaggacttcaagaatgacaaacaggctctggagtat
cagcaaaggattgtggacattttactgaaggttatggtggacaattccgacttcacccca
tctcaggtcggctgtcttttcaccttcttggcacgacaacttgccaaaccagataatacc
ctctttgttaaccggaagctgtttgaccaggttctagagtttctatgtagtccagatgat
gactctagacatacagaaagacagcaggttctgctggagctgctgcaggtcggtggtgtg
gtccagtttgatgagggccgtctccttgagctcgcagagaaggcagagttttatcaaatc
tgtgagtttatgtatgaaaacaagcacctttacgacaaaatattcgactgctacctgaaa
gaccctttgagaaaggaggagctcttcaactacatccataacattctgtccatgccgggc
tacagctcagaggagaaacatttggtgtgggtcaaaggccttcaacacatcaaggatttg
gtcagcttaaactcggctaagacagctgagctggtggcggtgcactttacagatgaggtg
cagtctatcatcacatctctgcaggatgactatttggtgttccagtttctgaagtgcctc
ctggaccccagctccagagagggtctgaatcttcagactgttctaagattgggctcagat
cttcacgagctcttagtggatctactgtgccagttcagtcctcagcatgtcatcgccttc
cttaagacctctcaggactacagactggaggaggccatccagatcacagagaaacacaag
ctgcatgaggccacagccttcctgctggagaggaagggagatgtacagggagctttcgaa
gtgctgctacagaccctgaagggcaaactgcacaaacttgcactaaaaggctcagaggca
gacaagcccgacgatgaggaggaggagacaggcaatgaagtgcagagtctgttacaaata
gtggatgaagctctgcatgacatcattactttgtgccagaggagctcgcacggtctcaac
cagcagcagagagaggctctgtggtttcctctcctcgaggcgatgatgtcaccacagaaa
ctactcaaaggtgccgatgccaaacacacttcagacgcactaaaagagctcactatgaaa
gtcttaaacagcatgtccagttttattgccccacctgccatcattcagcgcatcctacag
gatcctgtatatgggaaaggaaagctggctgagatccaggggctcattttagggatgcta
gagaccttcaactacgaacagacgttgttggagacaaccaccaatctgttgaactctgat
cttcactggtctctgtcacatctgcgtaaggcagtcagtagagggctccacccaagacag
gaccactgcaacatctgcttacagcagtacaaaagacgtcaggagagcgaggaagagatc
atcatcttcagctgtgggcatctgtaccactgccagtgtcttcagcgtaaagaggctggt
gttttgagtgaaaggcagtactcatggagctgctacaaatgcacatccaaccagggctcg
aggccagccgacagacccagcgcagagagctcccgatcacgctccgcttctctggcacag
accaaagtgacatctgctcatcgtgggaatgtggcagatgctcatgggagaaagatgttg
actgaagccactctggatgcccagcagacactggcctgggatcagttccgcactatctat
agaggaccatctaggcttgccgttctgacggaactcacccattctcatggcaatgagagg
tccggtctgtcgaatcctgcccctccaggaacaggaagtatttatcacagcgagaacttc
cagttaaagctttctccaccaccactggtggaagagtag
DBGET
integrated database retrieval system
