Rhinichthys klamathensis goyatoka (western speckled dace): 130087926
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Entry
130087926 CDS
T09701
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
rkg03015
mRNA surveillance pathway
rkg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130087926 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
130087926 (ddx39b)
03015 mRNA surveillance pathway
130087926 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130087926 (ddx39b)
03041 Spliceosome [BR:
rkg03041
]
130087926 (ddx39b)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130087926 (ddx39b)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130087926 (ddx39b)
Spliceosome [BR:
rkg03041
]
Complex C
Other components
EJC/TREX
130087926 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130087926 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
130087926
NCBI-ProteinID:
XP_056110460
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MTENDVDNELLDYEEDEVDGGVAGDTGLGHSDSVISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPICRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaacgacgttgataatgagctgttagactatgaggaggatgaagttgatggc
ggtgttgctggggatacagggcttggacacagcgacagtgtcatatccatcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcaggattcagggatttccttctcaaa
ccagaactcctgagagctatagtagactgtggctttgagcatccatctgaggttcagcat
gaatgcattcctcaggcaatcttggggatggacgtattatgtcaggccaagtctggaatg
gggaagacggctgtttttgtgttggccacccttcagcagctggagccagtgaccggtcag
gtatcagtgttggtgatgtgtcatactcgagaactggcgttccagatcagcaaagagtat
gagcgcttctccaaatacatgcctagtgtcaaggtggcagtgttctttgggggtttatct
ataaagaaggatgaggaggtgctgaagagagagagccctcatgtggtggtgggaactcct
ggacgtattttagctctgtctcgcaacaagagtctcaacctgcgacacatcaagcacttc
atccttgatgaatgcgacaaaatgctggagcaacttgacatgcggcgggatgtccaggaa
atctttcgtatgacccctcacgagaagcaagtcatgatgttcagtgctaccctgagtaaa
gagatccgtcccatctgtaggaagttcatgcaagatccgatggaaatttttgtggacgat
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcttggatgtgttggagttcaaccaggtggtgatcttc
gttaaatcggtgcagcgttgtatcgctcttgctcagttgctggtggagcaaaatttccct
gccattgccattcatagagcaatgcctcaagatgaaagactagctcgatatcagcaattt
aaggatttccagagacgaatcctagtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacattgcgttcaactacgacatgcctgaagattcggacacatacctgcat
agggttgcgagagccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgcacgcactttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcgtcgtacattgaacaaacccgataa
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integrated database retrieval system
