Rhinichthys klamathensis goyatoka (western speckled dace): 130088066
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Entry
130088066 CDS
T09701
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg02010
ABC transporters
rkg04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130088066 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130088066 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rkg02000
]
130088066 (cftr)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
130088066 (cftr)
Transporters [BR:
rkg02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
130088066 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
SMC_N
AAA_29
RsgA_GTPase
AAA_16
MMR_HSR1
nSTAND1
FtsK_SpoIIIE
DUF87
AAA_23
Dynamin_N
MeaB
T2SSE
ATP-synt_ab
DUF5805
Intein_splicing
Motif
Other DBs
NCBI-GeneID:
130088066
NCBI-ProteinID:
XP_056110644
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MQRSPVEDASCLSRYFFWWTNPIMRKGFKEKLRPSDVYQAPSQDAADILAERLEKEWDRE
VASGRKKPSLLRALARCFIGPFLLFGFLLYIGEATKTVQPQLLGRIIASFDPAHEPERAN
GYFFAFGLGLLFTARFLLLQPALFGLHRLGMQIRIALFSIIYKKTLKLSSRVLDKISTGQ
LVSLMSANLGKFDQSLGMAHFVWISPLQCILCTGLIWELIDVNSFCALAAISLLGVLQAF
LSHKMGPYKAQKVLLTNKRLALTSEIMENLHSVKAYGWEEIMETLIKNIRQDEVKLTRKI
GSLRYFYSSAYFFSAIFVIVAAVVPHALSRGINLRRIFTTLSYCMVLRMTVTRQLPGSIQ
MWYDTMRLIWKIEEFLSKEEYKLMEYDLSITELELKDVTASWDEGPGELLERIKQENKAN
GHHNGDAGLFFTNLYVTPVLKDISLNLKKGEMLAVTGSMGSGKSSLLMTILGELVPSSGK
IRHSGRISYSSQTAWIKPGTIRDNILFGLTYDEYRYKSVVKACQLEEDLAALPEKDKTPM
AEGGLNLSGGQKARVALARAVYRDADVYLLDAPFTHLDIATEKEIFDKCLCKLMASKTRI
LVTNKIEHFKRADKVLLLHNGESFFYGTFNHLQSERPDFSSLLLGLEAYDNISAERRCSI
LTETLHRVSVDESAGMRPERPSYRQVAPSMPKYIDERKASVIVNPLGAARKASFIQGPEE
EVRRTLPDRKFSLVPENELVDESFMGSDVYHNHGVHMAGQRRQSVLAFMTNAQGQGRREH
LQSSFRRRLSVVPQSELASELDIYTRRLSDSTYDITGVLEEENIEACLADEIDEIEEEFE
TTKWNTYVRYVSNNKSLLYVLIFILIVATVEVAGSVAGILLITDELWMEQNKRFEPNMTK
YSNMSSPGKNSAVIVTPTSSYYILYIYVATSESLLAMGFFRGLPFVHTMITISKKLHQKM
LRAVLSAPMSVLNTMKTGRIMNRFTKDMSTIDDMLPLLMFDFVQLTLVVVGCILVVSIVR
PYIFLAATPLAIIFIVLRKYFLRTGQQLKQLETEARSPIFSHLIISLKGLWTIRAFERQA
YFENLFYKTLNTHTATWFLYLSTLRWFLFRADIIFVFFFTLVAWIAVGTNQDKPGEIGII
ICLAMLILGTFQWCVATSIAVDGMMRSVDRVFKFIDLPSETPKPDKSKGSDLIIENANAQ
ADSSWPNRGQIDVRNLTVKYTEAGHAVLKNLSFTAEGGQRVGILGRTGSGKSSLFNALLK
LVYTDGDISIDGVNWNKIPLQKWRKAFGVVPQKVFIFTGPFRMNLDPYGCHSDEELWRVT
EEVGLKTLIEQFPDKLDFQLEYGGYVLSNGHKQLICLARSILSRARILLLDEPSAHLDPI
TVKVLKKTLRQSFSTCTILLSEHKVEPLLECQSFLMMDKGQVKTYDSIQKLLNETSHLKQ
AISPAERLKIFPRRNSSMRTPQSKLSSVTQTLQEEAEDNIQDTRL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgatcacctgtggaggatgccagctgcctctcaagatacttcttttggtggaca
aaccctataatgagaaagggttttaaggagaaactgaggccatctgatgtttatcaagca
cccagtcaagatgcagcagacattcttgcagagcgtttggaaaaagaatgggacagagaa
gttgcatctgggaggaaaaaacccagtctcctgcgagccttggcacgatgcttcatagga
ccttttctgttatttggcttcctcctatatataggcgaggctacaaaaacagtgcagcca
cagcttttagggcggatcattgcgtcattcgacccggcccatgaaccggagcgagccaat
ggttatttttttgcctttggacttggcttgctattcactgcccgcttcctcctgctccag
cctgccctgtttgggctgcaccgcctgggcatgcaaatcaggattgcactctttagcata
atctataaaaagaccttgaaactttctagccgagtcttggacaagatcagcacgggtcag
ctggtcagtctgatgtcagccaacctgggcaaatttgatcagagcctgggtatggcccat
tttgtatggatatcaccattgcaatgcatcctgtgtacagggcttatctgggaactcatc
gatgtcaatagcttctgtgcacttgctgctatctctttactgggtgtcttgcaggccttt
ctctcacataaaatgggtccttacaaagcacaaaaagtgctactgaccaacaaacgattg
gctttgacctcagagatcatggagaacctgcattcggtgaaggcctacggctgggaggag
ataatggagaccctcatcaagaacatcagacaggatgaggtgaagttgaccaggaagatt
ggctccctgcgctacttctacagctctgcatactttttctcagccatctttgtgattgtg
gccgctgtggtgccccatgccctcagtcgcggtatcaacctgcgtcgcatattcaccact
ctctcctactgtatggtgctgcgtatgactgtcactcgtcaactgcccggctccatccag
atgtggtacgacaccatgcggcttatttggaagattgaagaatttcttagtaaggaagaa
tacaagttaatggagtacgatctcagcatcacagagctggaactgaaagatgtgactgct
tcttgggatgagggtcctggtgaacttctagaaaggataaaacaggagaacaaagctaat
ggccatcacaatggagatgcaggcctcttcttcaccaacctatatgtgactcctgtactg
aaggacatcagcttgaacctgaagaaaggagagatgttggctgttaccggttctatggga
tctgggaagagctcattgttgatgaccatcctcggggagctggttccctcctctgggaag
atccgacacagcggccgaatctcctactcctcccaaacagcctggatcaagcctggaacc
atccgagacaacatcctttttggcctgacctatgatgagtatcgttacaagagtgtggtc
aaagcatgccagctcgaggaggatctggctgctcttcctgagaaggataagacacctatg
gctgaggggggtttaaacttgagtgggggtcagaaggcacgtgtagctctggccagggct
gtttacagggatgctgatgtttacctgcttgacgcaccatttactcacctggatattgca
acagaaaaagaaatatttgacaaatgtctttgtaagctgatggcctccaagacacgcatc
ttggtaacaaataagattgagcattttaagcgggccgataaggtcctactgctccacaac
ggtgaaagttttttctacggcaccttcaatcaccttcaatcggagcgtcctgattttagc
tctttgcttctgggtttggaggcctatgacaatatcagcgccgagcgccgctgctctatc
ctcacagagactctccaccgcgtctcggtggatgagagcgcaggcatgcgacctgaacgc
ccctcttatcgccaggtggccccctccatgcccaagtacatcgatgagagaaaagcttca
gtgatcgtcaaccctcttggagcagctcgtaaggcatctttcattcagggaccagaggaa
gaggtccggaggacattacctgaccggaagttctccctggtgcccgagaatgagctagta
gatgaatccttcatgggaagcgacgtgtatcataaccacggtgtgcatatggctggtcag
aggaggcagtcggtgttagctttcatgaccaatgcacaaggccagggccgtcgtgaacac
cttcagtcttctttccgcagacggctgtccgtcgtgcctcagagcgaactggcttctgag
ctggacatctacactcgccgcctgtcggacagcacgtatgacattaccggggtcctggaa
gaagagaatattgaggcatgtttagctgatgaaatagatgaaatagaggaggaatttgaa
acgacaaagtggaacacgtatgtcagatatgtgtcaaataataaaagtcttctttatgtt
ctgatcttcatcctcattgttgctacagttgaggttgcaggatctgtagcagggattctt
ctgataactgatgaactttggatggaacagaataaacgatttgagccaaacatgacaaag
tactccaacatgtcttcacctggaaaaaactctgcagtcatcgtgacccccacaagcagc
tattacattctctacatctatgtggccacatcagagagcctcctcgcaatgggatttttc
cggggtcttccatttgtgcacactatgatcacaatctccaagaaactgcaccagaagatg
ctacgtgctgttctcagtgcacccatgtctgtgctcaatactatgaagacaggccgaatc
atgaataggttcaccaaggacatgtccacaatagatgacatgcttcctctcctcatgttt
gactttgtccagttgactttggtggtggttggatgtattcttgtggtgtccatcgtgcgg
ccgtacatattccttgcggctactcccctggccattattttcattgtgttgaggaagtac
tttctccgtacgggtcagcagcttaaacagctggagacagaagctcggagccccattttc
tcccacctcatcatctcgctgaagggtttgtggacaatcagggcctttgagcgacaggct
tactttgagaacctgttctacaagaccctcaacacccacacagccacctggttcctctac
ctgtcgaccctacgatggtttctcttccgcgccgacatcatcttcgtgttctttttcacg
ttggtcgcctggattgcggtaggaaccaaccaggataaaccgggtgagattggtatcatc
atatgcctggcaatgctcattctaggcaccttccagtggtgtgtcgccaccagcattgcg
gtagatggaatgatgcgttctgttgaccgggtgtttaagttcatcgacctgccatccgag
acacccaaaccagacaaaagcaaaggctcggatctgattatcgaaaacgccaatgcacag
gctgactcaagctggcctaaccgcggtcagatcgatgtgcggaatttaacagtcaaatac
acagaagcgggtcacgctgtccttaagaacctctccttcactgcggagggtggacagagg
gtgggcattttgggccgaacaggttctgggaagagttctctgttcaatgctcttctgaag
ctggtttacacagatggagatatctccattgacggggtcaactggaacaaaattcctctt
cagaagtggaggaaagcctttggcgtggtgcctcagaaagtcttcatcttcacgggacca
ttccgcatgaacctagatccttatggctgccatagtgatgaggagctgtggcgggtcaca
gaggaggtcggtctcaagacactgattgaacagtttccagacaaactggacttccagctg
gaatacggaggttatgtactgagtaacggccacaaacagctcatatgcctggctcgctcc
atcctcagcagagcccggatcctcctcctggatgagcctagtgcccatctcgatccaata
acagtaaaggtgttgaagaagacattgcgacagtctttttctacatgcactatattactg
tctgagcacaaagtggaaccactgctcgagtgccagtctttcttgatgatggacaagggt
caggtgaagacctacgattccattcaaaagctgctgaatgagaccagtcatctaaagcag
gcgataagtccagccgagcgcctcaaaatcttccctcgtcggaattctagcatgcgcacg
cctcaatccaaactaagctctgttacgcagacactacaggaggaggcagaggacaatatc
caagacactcgcctctga
DBGET
integrated database retrieval system
