Rhinichthys klamathensis goyatoka (western speckled dace): 130088121
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Entry
130088121 CDS
T09701
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03030
DNA replication
rkg03410
Base excision repair
rkg03420
Nucleotide excision repair
rkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130088121 (rfc5)
03410 Base excision repair
130088121 (rfc5)
03420 Nucleotide excision repair
130088121 (rfc5)
03430 Mismatch repair
130088121 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rkg03032
]
130088121 (rfc5)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130088121 (rfc5)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130088121 (rfc5)
DNA replication proteins [BR:
rkg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130088121 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
130088121 (rfc5)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
130088121 (rfc5)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130088121 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
130088121 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_14
AAA_22
AAA_11
AAA_24
RuvB_N
AAA_16
DEAD
AAA_assoc_2
DUF815
ResIII
PhoH
AAA_7
AAA_19
ATPase_2
AAA_5
TIP49
AAA_30
DNAX_ATPase_lid
Mg_chelatase
AAA_2
Thioredoxin_6
bpMoxR
Motif
Other DBs
NCBI-GeneID:
130088121
NCBI-ProteinID:
XP_056110728
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MASTSKAQQQMRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGCKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQSQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTTAYNQIMQLKTLKGLALNDILTEVHLLIHRVDFPPSIRMGLLIKLA
DIEYRLSSGTNEKIQLSSMVAAFQAVRDIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagtaaagcacagcagcagatgagaaatttaccatgggttgaaaagtac
aggccacaaacattagatgatctcatctctcaccaagatatcctgagcacaatccagaag
ttcatcagtgaagaccgattgcctcatctgctcttctatggacctccaggaacaggaaag
acctctactatactagcatgtgctaaacagctgtacaaagataaagagttcaactccatg
gttctggagctcaatgcatcagatgaccgtggcatagacgtggtgagggggccgatcctc
agctttgccagcacgcgaaccatcttcaagaaaggctgcaagttggtgatcctggacgag
gcggatgctatgacccaggacgcacagaatgctttgaggagagtcattgagaagttcaca
gagaacacacgtttctgtctgatctgtaactacctttcaaagatcatacctgcgctacag
tctcgatgcacgcgctttcgtttcggccccctgtcccagagccagatgatccccagacta
gaacatgtgatacagcaggagagcattgacatcactccagatggcatgaaggccattgtg
acgctctcaacaggagacatgagacgatcactaaacattttacagagtacccatatggcc
tatgggaaggtgacggaggagacggtgtacacatgcactggacatcctcttagatcagac
atcgccaacatactggactgggccctcaataaagacttcaccactgcgtacaaccaaatt
atgcagctcaaaactctgaaaggtctggcacttaatgacattctaaccgaagttcatctt
ctcattcaccgcgtggacttccctccctctatccgcatgggtttgcttattaaacttgca
gatattgagtatcgtctgtcctcgggaaccaatgagaagatccagctgagctcaatggtt
gctgctttccaggctgttagagacatagtagtcagcgacggatag
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integrated database retrieval system
