Rhinichthys klamathensis goyatoka (western speckled dace): 130088202
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Entry
130088202 CDS
T09701
Symbol
tnca
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04510
Focal adhesion
rkg04512
ECM-receptor interaction
rkg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130088202 (tnca)
04518 Integrin signaling
130088202 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130088202 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rkg00536
]
130088202 (tnca)
Glycosaminoglycan binding proteins [BR:
rkg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130088202 (tnca)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Pur_ac_phosph_N
Fn3_Dep-1_2nd
DUF7949
EGF
Fn3_Dep-1_1st
hEGF
fn3_2
EGF_PEAR1L
Big_5
Motif
Other DBs
NCBI-GeneID:
130088202
NCBI-ProteinID:
XP_056110838
LinkDB
All DBs
Position
Unknown
AA seq
2360 aa
AA seq
DB search
MWSGRLTFSCLVLATLMTLNHAGLVKKMIRHRREALTIPGVHNVTLPNSSQPVVFNHVYN
IKVPGSSLCVDLDSPGGSDLEQKDAPSGSEVTDQTLDDSNQIVFTHRINIPKQACGCTGE
LPDLKELLSRLEMLEVEVSTLREQCGTESTCCSAEVTGAVGTKPYCSGHGNYSTETCGCV
CAPGWKGPNCTVPNCPGDCSDQGRCVNGKCECFEGFTGEDCSLETCLVDCGENGRCVDAA
CVCNEGFSGEDCTGSDCLNNCLGRGRCVDSECVCDEPWTGFDCSELICPNDCYDRGRCDN
GTCHCDKGFIGEDCGTLSCLNDCSGRGFCIDGRCVCDAGYSGEDCSSLTCPNNCNERGRC
FNGVCICDVGFLGEDCGKLSCPDNCNNRGRCIDGRCECDVGFQGHDCSELSCPNNCNNRG
RCVNGQCVCEEGFGGEDCSIKSCPSDCYGRGQCVDGKCVCFVNFAGEDCSELSCPSNCLN
RGRCVAGQCVCDEGFTGEDCAQKKCPNDCLGRGRCVEGQCVCQEGFEGQDCSVPACPGNC
NDRGRCINGKCVCDEGFVGDACGERSCPNECKGVGQCVDGLCVCDEGYIGEDCSEVSPPE
DLTVTDVTTEEVNLTWKNEMLVTEFLVTYIPTSPGGLQLDFRVPGDSTSATVSELEPGIE
YLINVYAVLNNKKSVPVSARVATHLPQPEGLKFKSITDTSVEVLWDQLNIPFDGWELNFR
NTKEENGKIVNNLTPSQTNFEQPGLGPGQEYEVTLSVIKNNTRGPEISSTVVTRIDSPGQ
VGVRDVTDRSAVISWSRPVSQVDGFRVAYGPSTDPLVHRDVDLSAKDTQYSLEDLKPDTE
YRVSLSSRRGDLTSEPISESFTTGLDAPSDLKAVDQTDNSITVEWKNSRSSIDGYRVKYG
PIAGGAHGEDMFPRRAGDTTWATITGLKPGTEYGFGVTAVQNERESVPATTNALTDLDPP
RDLEVRDSTESTLELVWKRPRAKISTYRLAFVSSDGRREELELPATATTHTLTGLTPGMR
YTVTLVSERARRRSAPATVTASTASFTFYLANTFPELGSAKGTDDNVISFVPLDNSESPF
SGSGYEDPTGTLTVSNVTSDGFDLSWESNMHIGYDSYTVELKDFSGKWNKEVHLNGEVNG
TKIRGLRASTEYQVRLYGISNNQRSSLLEAVAVTAQSTSPDVVALTVKSVSTMLPSLHKE
VQPTVSTSTFLTEDFKAEASGDELEGPSRGPPSDLKVTNVSRNSLWLSWSAPEGAFDSFI
VELNSTSNKSKEHIIDVSGDARQVHVDGLTAGMHYEITLYGMKEGEKSQPVNVHVKTEEQ
KPQIGSLSVSDVSWDSFNVSWIIEDGLAFDSFVIEVANSAGGPEKQNLSVSGDARSLWMS
GLSPDTSYTITLYGVHQGSILGSINIEAATDSAPMVGSLYVSNITSESFSISWNDTRGDI
ERFILEIIDSSWQREPVEYNLTHGTQSYEITGLQPTTDYIAYLTGVMKGRRTDSVSAVAS
TAAEPDLSGLVVSNITSDTVSLSWRTGDKAFDNFIVEVRESALPTQATGRTLPTGARSTV
LTGLRGDTRYQIKLYATSGGANTAALTTVVTTEPKPKLGTIVVSETLPNSLALSWSTLSG
HFDGFAARITDREQLYDVVELRLSGSERNVTVMGLMDSTVYDIVFYGLSRGRQTPSVSFN
TSTASLPKVGNLTVSEITPYGFRVSWEADSSEGFSHFQVKVSDSGLLLEPQEFVVPGNQT
LLDVLGLITGIGYEVSVTGVSGNGLQSRPITTVAVTEAEPEIEHLFVSDVTPESFRLAWT
AEDDVFDRFVLKVRDSRKLSHPREFVVAGDERTKVLTQLLGGTEYEIELYGVTLEHRSQP
VTAVARTGLGVLRDLRFSDVTDTSAVVYWTVPRAQPDSFRITYFPVQGGTPMIVMVDGSQ
SQVSLINLSPGEMYQVSVIAVKGLEESEPVSDTFTTALDTPRSLTAVNVTDASALLLWQP
AVATVDGYFITYSADTVPAISEQVSGNTVEFEMTSLAPATEYTVNVYAIRNQEKSAPATT
DFTTDVDAPRDLVASNIQTESAVLSWKPPRAAVSGYILTFQTSDGDVRELNLDPSVTSHD
LSNLRSTTEYTVRLQAVSEDMRSNSISTVFTTAGMLYRKAKDCSEALLNGETSSGPYTIY
ITGDEKQPVQVYCDMTTDGGGWMVFLRRQSGKVDFYRNWRNYSAGFGDTNDEFWLGLLNL
HKITTAGQYEIRVDLRDGPETVFAVYDKFYISDTRSRYKIQIGAYSGTAGDSLSYHQNRP
FSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDSSHSKGINWFHWKGHEHSIPF
AEMKIRPANFRNLEGRRKRS
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggtcaggtcgcctgactttcagctgtttggttttggccaccctgatgactctaaat
cacgccggccttgtaaagaagatgatcaggcaccgacgggaagctctgacgatccccggc
gtacacaacgtaacccttccaaactcttcccaaccggtcgttttcaaccacgtttacaac
atcaaagtcccgggtagctctctgtgtgtggatctggactctccgggtggttcggatctc
gagcagaaggacgcaccatctggctcagaagtaacagaccagacattggacgacagtaat
cagattgtcttcacccatcgcatcaacatccccaagcaggcctgtggctgtacgggtgaa
ctgccggatctgaaggagctcctgagtcggctggagatgttggaggtggaggtgtccaca
ctcagagagcaatgcggcacagagtccacctgctgcagcgcagaggtcacaggtgctgta
ggaacgaagccctactgcagcggccatggaaactacagcactgaaacctgcggctgtgtt
tgtgctcccggatggaagggccccaactgtaccgttcccaactgtcccggagactgcagc
gaccagggccgctgcgttaacggaaagtgtgagtgttttgaaggcttcacgggtgaggac
tgcagcttggaaacctgtctggttgactgcggtgagaacgggcgttgcgttgatgcagcg
tgtgtctgcaatgaaggcttctctggggaagattgcacaggttcggattgcctcaacaac
tgtttgggacgcgggcgctgcgttgatagtgagtgtgtctgcgacgaaccctggactggc
ttcgactgctccgagctcatctgcccgaatgactgctacgaccgcgggcgatgcgacaac
gggacctgtcactgtgataaaggcttcatcggagaagactgtgggacactctcttgtctg
aacgactgctctggacgaggtttctgcattgatggccgctgtgtgtgtgacgccgggtac
tcaggcgaggactgttccagcttaacctgtccgaataactgcaacgaaagaggacgctgc
tttaacggagtgtgtatttgcgacgtgggcttcctcggagaggactgcgggaagctctca
tgcccggacaactgcaacaaccgaggtcgctgcatagacggtcggtgcgaatgcgatgtt
ggcttccaaggccacgattgctcagagctcagctgccctaataactgcaataatcgcggg
cgttgcgttaacggccagtgtgtttgcgaagagggttttggcggcgaggactgcagcatc
aaaagctgcccgtcggactgctacggtcgaggccagtgcgtggacgggaagtgcgtttgc
tttgtaaacttcgcaggcgaagactgcagtgagttgagctgcccgagcaactgcctgaac
cgtggacgctgcgtcgcagggcagtgcgtttgcgacgaaggcttcaccggagaggactgc
gctcaaaagaagtgtcccaatgactgcctcggccgtggacgctgcgtggagggccagtgt
gtttgccaggagggttttgagggtcaggactgctccgttcccgcctgccctggaaactgc
aacgaccgcgggcgctgcatcaacgggaaatgtgtgtgcgacgagggcttcgttggagat
gcctgtggagaaagaagctgtccgaacgaatgcaagggagtgggccaatgtgtggacggc
ctctgcgtttgtgatgaaggctacattggcgaggattgctcggaagtctcaccaccggaa
gacctgaccgtcacagatgtaaccacagaggaggtgaacctcacatggaagaacgagatg
ctggtgacggagtttttagtcacgtacatcccgacttcaccaggcggcctgcagttggac
ttccgagtgcctggagacagtacgtctgctaccgtctctgagctggagcctggaatcgag
tacctgatcaacgtttatgccgtcctcaacaacaagaagagcgttccagtcagtgccaga
gtggccacacatctaccgcagcctgagggcctgaagtttaagtccatcactgatacgtct
gtggaagttttgtgggaccagctgaacattccttttgacggctgggagctcaactttcgt
aacacgaaggaagaaaacgggaagatcgtgaacaacctgacaccttcccagaccaacttt
gagcaaccaggactcgggccgggacaggaatacgaagtcactttgtccgtcataaagaac
aacaccagaggacccgaaataagctcgactgtagttacaagaatcgattctccaggacag
gttggtgttcgcgatgtgactgacaggtcagcagtgatctcctggtccaggcctgtgtct
caggtggacgggttcagggttgcgtacgggccaagcacagacccgttagtccatcgtgat
gtcgacctctcggccaaagacacgcagtacagcctggaagacctgaaacccgacactgaa
tacagagtgtctctcagttctagaaggggagatttgaccagcgagcccatctctgaaagc
ttcaccacaggcctggatgcccccagtgaccttaaagctgtcgatcagactgacaacagc
atcacagtggaatggaaaaacagccgctcatccatcgacggataccgtgtcaagtacgga
ccgatcgcaggaggtgctcatggtgaagatatgttccctagaagggcaggagacacgacg
tgggccacaattacaggcctgaagcctggaacggagtacggctttggagtcacagccgtt
cagaatgagagagagagtgtgccggccaccaccaatgcactgaccgatctggatccacca
cgagacctggaagtgcgagactccactgaaagcactctggaactggtctggaagagaccc
cgggccaagatctccacctacaggctagcgtttgtgtcgtccgacgggcgacgggaagaa
ctggagctgcctgcgactgccaccacacacacgctgaccggcctgacccctggcatgcgc
tacaccgtcaccctggtgtcagaacgcgcacggagaagaagtgctccagccactgtaacc
gcatccacagcatctttcactttttatctagcgaacacatttcccgagctcggttcagcc
aaaggcaccgacgacaatgtcattagctttgtgcctctcgacaactcagagagcccgttc
tctgggagtggatacgaggatcccaccggcaccttgaccgtgtccaatgtcacatccgat
ggatttgatctttcgtgggagtcaaatatgcacattggctatgatagttacactgtagaa
cttaaagatttctcagggaaatggaacaaggaggttcatctcaatggggaggtgaatggc
actaaaatccgaggtctaagggcttccactgagtaccaagtaaggctttatggaatatcc
aataaccaaagatcttcgctactagaagcagtagcagttacagcacagtctacctctcct
gatgttgttgctttgaccgtcaaaagtgtttcaacaatgctaccaagcctccataaggag
gttcaaccaacagtctctacctccacttttttaacagaagattttaaagctgaagcctca
ggtgatgaacttgagggcccaagtcgagggcctccaagtgacctaaaagtcacaaatgtg
agcagaaatagtttgtggctatcttggtcagctccagaaggagccttcgatagcttcatc
gttgagctgaactcaacgtcgaataagtctaaagagcacattattgacgtatctggagac
gccaggcaggtccatgttgatgggctgaccgctggcatgcattatgagattactttatat
gggatgaaggagggcgaaaaatctcaaccagtcaatgttcacgtcaagacagaggagcag
aagccgcagattggcagtctgagtgtgtctgatgtatcttgggatagtttcaatgtgtcc
tggatcattgaggatggccttgcctttgacagttttgtgattgaagtggcaaattcagca
ggtggtccagaaaaacagaacctttcggtatctggtgatgcacgtagtttatggatgtct
gggctcagccccgacacgtcctatacaattacactatacggagtgcatcagggctcgatc
ctggggtcgatcaacattgaagcagcaacagatagcgctccaatggttggcagtctgtat
gtgtctaatattacatcagagagcttctccatttcatggaatgacacgagaggagatatt
gagaggtttatcctggagattatagactctagctggcagcgggagccagttgaatataac
ctaacacacggtacacagtcatatgaaatcactgggctacagccaactactgactatata
gcttacctcactggagttatgaagggaaggagaacagactccgtcagtgctgtcgcctcc
acagcggccgagcctgacttgtctgggctagttgtttcaaacattacctcagacacagtg
tcgctctcctggcggacgggagataaggcgtttgataattttatagtcgaggtgagagag
tctgctttgcccacgcaggcgacggggcgcaccttgcccacaggtgcccgctccacggtg
ctgaccgggctcagaggagacacgcgatatcagatcaagctgtatgccacctctggtggc
gccaacacggctgccctgacaactgtagtaaccacagagcctaagcctaaattgggcacc
attgtggtgtctgaaaccctcccgaatagcttggcgctgtcctggagcacactgtcaggc
cactttgatggctttgctgctcgtatcactgaccgtgagcagctgtatgatgttgtagag
ctcaggctatcaggatcagagaggaacgttaccgtgatgggtcttatggactctacggtc
tatgacatagtgttttatggtctgtctcgtggccgtcaaactccatcagtttccttcaat
accagtacagcgtcattacctaaagtgggaaacctcaccgtttcggaaattaccccgtac
ggatttcgggtgtcctgggaagcagattcttctgagggcttcagccattttcaggtaaag
gtgtcggactctggcctgctgctggagccacaagagttcgtagtgccgggaaaccagacc
ttactggatgttttgggcctgattactggcattggctatgaggtcagtgtgaccggggtg
tcagggaatgggttacagtctcgtccaatcaccacagtggctgttacagaggcagaacca
gagattgagcaccttttcgtgtcggacgtcacccctgagagtttccggctggcctggacg
gcagaagacgacgtttttgatcgatttgtgctcaaagttagagattcgagaaagctctcc
caccctcgagagttcgttgtggcgggcgatgaaagaaccaaagtgttaacacagcttttg
gggggaactgagtatgaaattgagctttacggtgtcacgttggaacatcgctcccaaccc
gttactgcggttgccagaacaggccttggagttctacgagaccttcgtttctctgacgtc
acggacacatcagctgtggtttactggaccgtaccgcgtgcccaaccggactccttcagg
atcacttacttcccagtccaaggaggtacacccatgatcgtgatggtggacgggtcacaa
tctcaggtttcgctaataaatctgagtcctggagagatgtatcaggtgtcagttattgca
gtgaaaggtctggaggagagcgaaccagtgtccgacacttttaccacagccctggacact
ccgcgcagcctgaccgctgtcaatgtcactgacgcgagtgcgctgttgctctggcagcct
gcagttgcgactgtggatggatacttcatcacatacagcgcagacactgtgcccgcgata
tcagagcaggtttctggcaacacggtggagtttgagatgacttcactggctccagcaact
gaatacacagtcaatgtttatgccataagaaaccaagagaaaagtgctccagcgaccaca
gacttcacaacagatgtggatgctccgcgtgatttggttgccagtaatattcagacagaa
agcgctgtgctctcctggaagcctccccgggccgccgtcagcggctacatactgaccttt
caaacatcggacggggatgtcagggaattgaatctagacccatctgtcacctcacacgat
ctgtcgaatctgagaagcaccacagaatacaccgtcaggcttcaggccgtctctgaggac
atgaggagcaacagtatcagcacggtcttcaccactgctggcatgctctacagaaaagcc
aaggactgctcagaagctctgctgaacggagagacgtcctccggcccgtacacgatttac
ataaccggagatgagaaacaaccggtccaggtgtactgcgacatgaccaccgacggcggc
ggctggatggtgttcctacggcgtcagagcggcaaggtcgatttctacaggaactggagg
aattactctgcaggattcggtgacacgaacgatgagttttggctcggactgttgaatctt
cacaaaatcacaacggctggtcagtatgagatacgtgtggacctgcgtgatggaccagag
actgtgtttgctgtttacgataaattttacatctcagacactcgttctcgctacaagatc
cagattggtgcatacagtggtaccgcaggcgattccttgtcgtatcaccagaacagaccc
ttctccacatatgacaatgacaatgacattgccgtcaccaactgcgccctctcctacaag
ggagcgttttggtataaaaactgccatcgagtgaatctgatggggaaatatggagacagc
agtcacagcaaaggcatcaattggttccactggaaaggtcatgagcattcgattccattt
gcggagatgaagatccggccagcaaatttcagaaacttggaaggcagacggaaaagatca
taa
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integrated database retrieval system
