Rhinichthys klamathensis goyatoka (western speckled dace): 130088584
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Entry
130088584 CDS
T09701
Symbol
mgrn1a
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04120
Ubiquitin mediated proteolysis
rkg04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130088584 (mgrn1a)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130088584 (mgrn1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130088584 (mgrn1a)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130088584 (mgrn1a)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130088584 (mgrn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130088584
NCBI-ProteinID:
XP_056111383
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFTSHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDSTPEDTGDPKVLYSV
EFCFDTDARVAITLYCQAFEEFANGMAIYSPKSPSMVSETVHYKRGINQQFCLPSFKIDF
TKWKPEELNFDLDKGVFPLVIQAIVDDGDDVTGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENRNNLETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNAC
ADTLRYQANNCPICRLPFRALLQIRAVRKKTAAALSPVSFSPVLSQSSDHTEHSSQNADN
IPPGYEPISLLEALNGVQPMSPSIPSAPLYEEIQFSGEMGDPLNLTGRQQNADPASMKGK
GSKSPDGSTRSPSSPIQEEEDEERMSELSDTQPQSVLPCSLSPTEATAESTNPGFPNSGS
DSRSLSVSVSEILQDCHSERSSLSRTESDPSADLALPGSSESIESLKSQSTSSSSQPLLC
LPSTLRMEDERLAS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaatactgagtcgaaggattgctggtgttgaagacatcgatattcaagccaat
tcagcgtacagatatcccccaaaatcaggaaattattttaccagtcattttttcatgggt
ggagaaaagtttgacacaccccatccagagggatatctttttggggaaaatatggatttg
aatttccttggcaacagacctgtgcagtttccctatgtgacgccagcaccacatgagcct
gtcaagacgctgaggagtttggtgaacatcaggaaggattctttacgacttgtcaggtat
aaggatgattcggacagcacaccagaggacacaggcgatcctaaggtcctttacagtgtt
gaattctgctttgatactgatgccagagtggctattacattatactgtcaagcctttgag
gagtttgccaatgggatggcgatatacagccccaagagcccttcaatggtgtctgagacg
gtccattataagagagggattaatcagcaattttgtctgccatccttcaagattgatttc
accaaatggaagcctgaagagctgaactttgatctggacaaaggcgttttccctttggtg
atccaagcaatagtggatgatggagatgatgttaccgggcatgcacatgttcttttggca
gcttttgaaaggcatgttgatggcagtttctcagtgaagcctttgaaacagaagcaaatc
gtggaccgtgtgagctatctgctgcaggagatttacggcattgaaaaccggaacaatctg
gagacaaagtccacagaggatgagaacagtgacaacagcagcgagtgtgtggtttgttta
tcagacctgcgtgacacactgattctcccttgcaggcacctgtgtctgtgcaatgcctgt
gctgacacactgcgttaccaggccaacaactgccctatctgcagactgccattcagagcc
ctgctccagatccgagccgtgaggaagaaaacagccgccgctctttccccggtttccttt
agcccagtgctgtcccaaagctctgaccatactgagcattcgtctcagaatgccgacaac
atccctcccggctacgagcccatctccctgcttgaagccctaaacggagtgcaacccatg
tccccttcaatcccatcagcacctctctatgaggagatccaattttcgggggagatggga
gatcccctcaacctgactgggcgacagcaaaacgcagatcccgcatcaatgaagggcaaa
ggtagcaagtcaccagacgggtctacacgttctccctcatcccccatacaggaggaggaa
gatgaggagagaatgtcagaactctctgatacccaacctcagtctgttctgccttgcagt
ctcagtcccactgaggccacagcagagtccaccaatcctggtttcccaaattcaggttca
gacagcagatcactgagtgtgtctgtgagtgaaattcttcaggactgccacagcgagcgc
agcagcctgagccggacagaaagtgacccctcagcagatctggccctgcctgggtcatca
gagtccatagaaagtctgaagagtcagagcaccagcagctccagtcagcctctgctctgc
ctccccagcaccctccgcatggaagatgagcgtctcgcttcataa
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